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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-cutadapt">Debian Med / python-cutadapt</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/6d4c89f215dea2132630d00d8d9277acbee1abb4">6d4c89f2</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">easier d/watch that does not affect routine-update
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/89e1af12df8d0ba4fe7ab8dfc714dd9df9f792c7">89e1af12</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/afc23835c3b1b22776876ed5f9011295b0059b30">afc23835</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/1eea51aa5f6f47dcbb127340560e8c0495fe4099">1eea51aa</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.9'

Update to upstream version '2.9'
with Debian dir aae00d2183ea370bb4d947e7f5d59857fc7ac3b5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/44a48053492ef8b3646ccbd802d198a16edbc017">44a48053</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/c7506a2b0931a34e58fb0dc67b6db41da3b24b1e">c7506a2b</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:14:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/34e57ab55812767fb499cd3738b1ce33f22fac49">34e57ab5</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-03-31T16:15:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#4990be809a537bf86e4be2fe2e8251c83d8bd129">
CHANGES.rst
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#df0576cbb783bc50b36e1efa3cbe0564a26c8295">
doc/conf.py
</a>
</li>
<li class="file-stats">
<a href="#ee1d7278a009e2c5c652622fe43dc77e39af740d">
doc/guide.rst
</a>
</li>
<li class="file-stats">
<a href="#6677207c6fa30ac9cec19ad036ae842582159ecb">
doc/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
</a>
</li>
<li class="file-stats">
<a href="#babdfe5d368a4907abadce7f9b00dfab2489185a">
src/cutadapt/__main__.py
</a>
</li>
<li class="file-stats">
<a href="#8fb347891ec0a40b16ef2bdbe361f823e12aa016">
src/cutadapt/adapters.py
</a>
</li>
<li class="file-stats">
<a href="#6ed465db6839a69141086c2acf1dc01a8b17a981">
src/cutadapt/filters.py
</a>
</li>
<li class="file-stats">
<a href="#a44086ebe255bc0df91ea1d82811c828e6f5e324">
src/cutadapt/modifiers.py
</a>
</li>
<li class="file-stats">
<a href="#1b86cdea057b59b4d05ba7fde4aea9df4e8fe9e8">
src/cutadapt/pipeline.py
</a>
</li>
<li class="file-stats">
<a href="#5a4a773b73e0bdb43c051d1b039d337cd428e3e1">
src/cutadapt/qualtrim.pyx
</a>
</li>
<li class="file-stats">
<a href="#0947279ab1fb32f21dde9a563c2b4ca1cd2fc0de">
src/cutadapt/report.py
</a>
</li>
<li class="file-stats">
<a href="#f1290ccc2d6eec0bb1ad5edec40935fde2e76d6d">
<span class="new-file">
+
tests/cut/maxee.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#52341cb116c436b2626aa6ee2671f055508dcadd">
<span class="deleted-file">

tests/data/SRR2040271_1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b397851f95cdd4c047a24eda3a5a0cd99f8c755f">
<span class="new-file">
+
tests/data/maxee.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#9289ad7183fa284327eb87184ee37b941ba6e3e0">
<span class="deleted-file">

tests/data/plus.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#4c91f80a781e5621e92c74fdd1bddaa8ef6b43e7">
tests/test_adapters.py
</a>
</li>
<li class="file-stats">
<a href="#83ff0d8e113228f36b352922cbbb938d0aa9384b">
tests/test_commandline.py
</a>
</li>
<li class="file-stats">
<a href="#124a8b77d32c7ca9f7f1966a0cde3894ce860e05">
tests/test_main.py
</a>
</li>
<li class="file-stats">
<a href="#4ad7124461a591ee5c5c2e30f24380a477c3ed52">
tests/test_paired.py
</a>
</li>
<li class="file-stats">
<a href="#9627b71ff9952493fda5865aea912319edd1cdd2">
tests/test_parser.py
</a>
</li>
<li class="file-stats">
<a href="#a29298d28cfcb546445a18cc3462646626165ac4">
tests/test_qualtrim.py
</a>
</li>
<li class="file-stats">
<a href="#bb92bf4985f91906d71414ff1f007cc598adff83">
tests/test_trim.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

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<a href="https://salsa.debian.org/med-team/python-cutadapt/-/compare/f5179cd5a896af6d9ab7051453da98e7dc86dc4d...34e57ab55812767fb499cd3738b1ce33f22fac49">View it on GitLab</a>.
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