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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a0573b0f228f6f0837400175b4a56ddade92bdc6">a0573b0f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-01T13:44:22+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a0573b0f228f6f0837400175b4a56ddade92bdc6#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Apr 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Apr 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4 | {imaging,practice,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 40 | {<span class="idiff left right">oncology,his,imaging,practice,covid-19,laboratory</span>} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 16<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5 | {covid-19,practice,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 40 | {<span class="idiff left right">practice,covid-19,laboratory,his,oncology,imaging</span>} | </span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 3<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dcm2niix | 27 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dicom3tools | 23 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 19 | {<span class="idiff left right">imaging,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">9 | {covid-19,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 19 | {<span class="idiff left right">covid-19,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">8 | {practice,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> minc-tools | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> pixelmed | 1<span class="idiff left right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> pixelmed | 1<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> ncbi-entrez-direct | 14 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> openslide | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> biojava-live | 13 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> king | 13 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> vtk-dicom | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> mia | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> cgview | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ea-utils | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> psychopy | 11 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> diamond-aligner | 10 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> king-probe | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> radiant | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> staden | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> dazzdb | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> plastimatch | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> pscan-tfbs | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">,bio-phylogeny,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> biosig4c++ | 8 | {<span class="idiff left right">physics,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">-phylogeny,cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> biosig4c++ | 8 | {<span class="idiff left right">imaging,physics</span>} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> bppsuite | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> fastlink | 8 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> fastlink | 8 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> gdcm | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> hunspell-en-med | 8 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,17 +50,19 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> phast | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> prime-phylo | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> seqsero | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> sigma-align | 8 | {<span class="idiff left right">cloud,bio-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> sigma-align | 8 | {<span class="idiff left right">bio,cloud,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> abacas | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> ampliconnoise | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> anfo | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> ampliconnoise | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> anfo | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> daligner | 7 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> ecopcr | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> embassy-domainatrix | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> embassy-domsearch | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> fitgcp | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> freecontact | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> gasic | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> jaligner | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,24 +72,23 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> phyutility | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> piler | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> saint | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> sibsim4 | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> bio-tradis | 6 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> sibsim4 | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> bio-tradis | 6 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> bitseq | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> codonw | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> embassy-domalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> estscan | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> fitgcp | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> freebayes | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> gasic | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> lamarc | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> logol | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> lucy | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> mauve-aligner | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> microbegps | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> mlv-smile | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> mlv-smile | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> openslide | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> paraclu | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> paraclu | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> perm | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> placnet | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> poretools | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -99,10 +100,10 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> scythe | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> seqtools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> sickle | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> spread-phy | 6 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> squizz | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> spread-phy | 6 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> squizz | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> tracetuner | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> treeview | 6 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> treeview | 6 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> alter-sequence-alignment | 5 | {bio} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> andi | 5 | {bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> baitfisher | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -128,10 +129,9 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> libdivsufsort | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> <span class="idiff left right">logol | 5 | {bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> ma<span class="idiff left right">psembler2 | 5 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> <span class="idiff left right">mapsembler2 | 5 | {bio,cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> ma<span class="idiff left right">uve-aligner | 5 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> murasaki | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> parsnp | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> proalign | 5 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,20 +139,22 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> quorum | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> repeatmasker-recon | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> samblaster | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> seer | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> sprai | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> sumatra | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> vsearch | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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149
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> beast-mcmc | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> beast-mcmc | 4 | {bio-phylogeny,bio} | </span>
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151
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> dwgsim | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> jmodeltest | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> jmodeltest | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> libpal-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> libsbml | 4 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,37 +164,36 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> patman | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> phipack | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> prottest | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> prottest | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> rampler | 4 | {bio} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> roguenarok | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> samblaster | 4 | {bio,covid-19} | </span>
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> sga | 4 | {bio} | </span>
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172
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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173
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> sweed | 4 | {bio} | </span>
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174
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> tvc | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> blasr | 3 | {bio-ngs,bio} | </span>
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177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> delly | 3 | {bio,covid-19} | </span>
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178
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> dicompyler | 3 | {oncology} | </span>
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179
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> dindel | 3 | {bio} | </span>
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180
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {<span class="idiff left right">imaging,covid-19</span>} | </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {<span class="idiff left right">covid-19,imaging</span>} | </span>
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183
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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184
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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185
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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186
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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187
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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188
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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189
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> rtax | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> rtax | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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190
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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191
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> seqmagick | 3 | {bio,covid-19} | </span>
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192
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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194
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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195
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> sumaclust | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> sumaclust | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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196
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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197
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> tnseq-transit | 3 | {bio,covid-19} | </span>
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198
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> transrate-tools | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -200,7 +201,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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200
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> velvetoptimiser | 3 | {bio} | </span>
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201
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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203
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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204
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> kma | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,14 +218,12 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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217
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> spaced | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> stacks | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"> thesias | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> thesias | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> tree-puzzle | 2 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext"> volpack | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -239,13 +238,14 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> qrisk2 | 1 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> stringtie | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> stringtie | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> augur | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="plaintext"> biobambam2 | 0 | {<span class="idiff left right">covid-19,bio,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext"> biobambam2 | 0 | {<span class="idiff left right">bio,bio-dev,covid-19</span>} | </span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> biosig4c++ | 0 | {physics} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -253,7 +253,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> fasta3 | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> fasta3 | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -274,7 +274,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> libics | 0 | {covid-19,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC278" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -289,7 +289,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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289
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> mia | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -310,9 +310,9 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="plaintext"> sift | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="plaintext"> smrtanalysis | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"> smrtanalysis | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="plaintext"> solvate | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="plaintext"> spaln | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"> spaln | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a0573b0f228f6f0837400175b4a56ddade92bdc6#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Apr 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 01 Apr 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,6 +8,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> bowtie2 | 2.3.5.1 | 2.4.1 | Alexandre Mestiashvili,Andreas Tille | Michael R. Crusoe | 2019-12-19 16:34:16+00</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,9 +18,10 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200<span class="idiff left right">118.1dc23ff</span> | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200<span class="idiff left right">330.e99c5d7</span> | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,14 +34,15 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libmaus2 | 2.0.713 | 2.0.714 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200328 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> proteinortho | 6.0.14 | 6.0.15 | Andreas Tille | Michael R. Crusoe | 2020-02-17 14:53:34+00</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,7 +57,6 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> scrm | 1.7.3 | 1.7.4 | Kevin Murray | Andreas Tille | 2018-12-17 13:05:34+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> simka | 1.5.1 | 1.5.2 | Shayan Doust | Andreas Tille | 2020-01-12 18:49:47+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,7 +67,7 @@ Last-Update: Wed, 01 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
71
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<td class="diff-line-num new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
73
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> source | id | severity | title </span>
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