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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/sumaclust">Debian Med / sumaclust</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sumaclust/-/commit/58ef6b19f62607bfe0c3f9144bdf323ac01c65ec">58ef6b19</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-02T08:17:46+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.35</pre>
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<h4>2 changed files:</h4>
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<a href="#8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2">
mtcompare_sumaclust.c
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<a href="#be4c194f54138c3c61c6898df3db7011638a026b">
sumaclust.c
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<h4>Changes:</h4>
<li id="8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2">
<a href="https://salsa.debian.org/med-team/sumaclust/-/commit/58ef6b19f62607bfe0c3f9144bdf323ac01c65ec#8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2"><strong>mtcompare_sumaclust.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,10 +15,10 @@</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <math.h></span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/time.h></span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/sequence.h"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libutils/utilities.h"</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/upperband.h"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/sse_banded_LCS_alignment.h"</span></span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/sequence.h"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libutils/utilities.h"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/upperband.h"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/sse_banded_LCS_alignment.h"</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"></span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "sumaclust.h"</span></span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"></span>
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<a href="https://salsa.debian.org/med-team/sumaclust/-/commit/58ef6b19f62607bfe0c3f9144bdf323ac01c65ec#be4c194f54138c3c61c6898df3db7011638a026b"><strong>sumaclust.c</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,18 +12,18 @@</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <math.h></span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/time.h></span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libutils/utilities.h"</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/sequence.h"</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_header_parser.h"</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_header_handler.h"</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_seq_writer.h"</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/upperband.h"</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/sse_banded_LCS_alignment.h"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libutils/utilities.h"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/sequence.h"</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_header_parser.h"</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_header_handler.h"</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_seq_writer.h"</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/upperband.h"</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/sse_banded_LCS_alignment.h"</span></span>
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22
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"></span>
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23
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "mtcompare_sumaclust.h"</span></span>
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24
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "sumaclust.h"</span></span>
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25
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="c"></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.3<span class="idiff left right">4</span>"</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.3<span class="idiff left right">5</span>"</span></span>
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27
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="c"></span>
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28
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="c"></span>
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29
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* ----------------------------------------------- */</span></span>
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