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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/sumaclust">Debian Med / sumaclust</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sumaclust/-/commit/9c8d466b54d0bf25de7f302be67a79e223f3df23">9c8d466b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-02T08:17:45+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sumaclust/-/commit/58ef6b19f62607bfe0c3f9144bdf323ac01c65ec">58ef6b19</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-02T08:17:46+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.35</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sumaclust/-/commit/24968de3a1e41ea0e34441ade55f90b3d0e6797b">24968de3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-02T08:17:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.35'
Update to upstream version '1.0.35'
with Debian dir 9230877f80e8a0e2c752cbadb30f33c6cb89b62d</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/sumaclust/-/commit/57e9cf1041ecff94f17461f1ebb53f0ad732d111">57e9cf10</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-02T08:18:59+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2">
mtcompare_sumaclust.c
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<li class="file-stats">
<a href="#be4c194f54138c3c61c6898df3db7011638a026b">
sumaclust.c
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sumaclust/-/compare/0107b3760acd6c6ed6afeca2cff19880999aeff1...57e9cf1041ecff94f17461f1ebb53f0ad732d111#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">sumaclust (1.0.35-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 02 Apr 2020 08:18:04 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">sumaclust (1.0.34-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Fix Build</span>
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<li id="8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2">
<a href="https://salsa.debian.org/med-team/sumaclust/-/compare/0107b3760acd6c6ed6afeca2cff19880999aeff1...57e9cf1041ecff94f17461f1ebb53f0ad732d111#8fd8499f5a746ba7a74cb6d31fadf8ed8c4762b2"><strong>mtcompare_sumaclust.c</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,10 +15,10 @@</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <math.h></span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/time.h></span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/sequence.h"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libutils/utilities.h"</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/upperband.h"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/sse_banded_LCS_alignment.h"</span></span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/sequence.h"</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libutils/utilities.h"</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/upperband.h"</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/sse_banded_LCS_alignment.h"</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "sumaclust.h"</span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"></span>
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<a href="https://salsa.debian.org/med-team/sumaclust/-/compare/0107b3760acd6c6ed6afeca2cff19880999aeff1...57e9cf1041ecff94f17461f1ebb53f0ad732d111#be4c194f54138c3c61c6898df3db7011638a026b"><strong>sumaclust.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,18 +12,18 @@</td>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <math.h></span></span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/time.h></span></span>
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14
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="c"></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libutils/utilities.h"</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/sequence.h"</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_header_parser.h"</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_header_handler.h"</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "libfasta/fasta_seq_writer.h"</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/upperband.h"</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "liblcs/sse_banded_LCS_alignment.h"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libutils/utilities.h"</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/sequence.h"</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_header_parser.h"</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_header_handler.h"</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>libfasta/fasta_seq_writer.h"</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/upperband.h"</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "<span class="idiff left right">sumalibs/</span>liblcs/sse_banded_LCS_alignment.h"</span></span>
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22
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "mtcompare_sumaclust.h"</span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#include "sumaclust.h"</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.3<span class="idiff left right">4</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define VERSION "1.0.3<span class="idiff left right">5</span>"</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;">/* ----------------------------------------------- */</span></span>
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