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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/28c3e098016c243c6306658d50c809de378cff1e">28c3e098</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T11:16:53+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.1</pre>
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</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<li class="file-stats">
<a href="#11b6bd8effd101bc84fd65cb117f69f8a96c6d1a">
<span class="deleted-file">
−
Dockerfile-aarch64
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<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
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<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<li class="file-stats">
<a href="#303d4b9f99e07a366aaca29d2205665e68f5a93d">
aligner_seed_policy.cpp
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<li class="file-stats">
<a href="#057e0784d807c7b84958635ddeeb5003f2751ece">
aln_sink.cpp
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<li class="file-stats">
<a href="#23fe7d40df390744370c0e80c2bcc72a078c6b0a">
alphabet.cpp
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<li class="file-stats">
<a href="#f20480bd22275c372d93bee8d208a2b7943b6485">
alphabet.h
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<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
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<li class="file-stats">
<a href="#20032103dc113eacde067d1154cc770339598f43">
bowtie2
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<li class="file-stats">
<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
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<li class="file-stats">
<a href="#622d3bcfba0df0e4ae8a0849416ed2d2cf987528">
bowtie2-inspect
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<li class="file-stats">
<a href="#999fd61d6ccb4c3bc242370d11e9095438b9e1d1">
bt2_build.cpp
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<li class="file-stats">
<a href="#d1904db8401bf0137951f60c3d4a34a7cf8e2e84">
bt2_idx.h
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<li class="file-stats">
<a href="#6026283a643bf7fb08c2ef0b797486df93cf0698">
bt2_search.cpp
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<li class="file-stats">
<a href="#9f15b0fe50d277c8d231ce47c6a42a8355f51ff0">
diff_sample.h
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<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
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<li class="file-stats">
<a href="#617e3588fa33172eda41426322da3580ee8a9308">
doc/website/faq.ssi
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<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
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<li class="file-stats">
<a href="#90c845de025e4a3981ac510de22afc55255c90b6">
doc/website/old_news.ssi
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<li class="file-stats">
<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
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<li class="file-stats">
<a href="#59bf596910fb7006481a4d8a45de81ff2bd75a4d">
doc/website/rhsidebar.ssi
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<li class="file-stats">
<a href="#78173a2355322cb62fac5714cd9aa8361ca724e7">
filebuf.h
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<li class="file-stats">
<a href="#7f67d2155d54f4e729be9406ee4e55f1dbc7c731">
outq.cpp
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<li class="file-stats">
<a href="#05e12a0e0e7a2de81e17be273fba0f7b25efeda8">
outq.h
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<li class="file-stats">
<a href="#7c4ae52e4a13c990d16c9530fb874ed79064a5cd">
pat.cpp
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</ul>
<h5>The diff was not included because it is too large.</h5>
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