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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/af9e96fa626dca189c295d75bcadbe2d701b7925">af9e96fa</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T11:16:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/28c3e098016c243c6306658d50c809de378cff1e">28c3e098</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T11:16:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/e23d15da5af804a7c0ab266b4a7d561873590e25">e23d15da</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T11:17:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.4.1'
Update to upstream version '2.4.1'
with Debian dir 41af0a984657070321cd57e9fd5fd54dfb696bec</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/c2b1d2c27a360a96eb55e91268f107f614b5a618">c2b1d2c2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T11:17:06+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/8ce2630841927af5b96fa30896ae802e30abcb15">8ce26308</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T09:43:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Freshen patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/a14026426bbe507e9f352492c0479c5a7c5651c9">a1402642</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T09:43:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">no need to exclude files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/e0a7281175e103bc4ed422da0d9082d3f156870a">e0a72811</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T09:43:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/upstream/metadata: Add Bug-{Database,Submit},Repository{,-Browse}
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/55a2516c1d90a701f55c3306dedab454efda64dd">55a2516c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T10:32:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update SIMDe version to 2a9ff6ddabfb940bdd29a0a0cd1ae3190f5fc97b 2020-04-03
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/c789dc07779fc7419662065b3f670f22ba1c20aa">c789dc07</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T10:32:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">enable building in pbuilder
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/-/commit/c801da14953540bafd3005114d045776db47eb70">c801da14</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T10:32:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 2.4.1-1
</pre>
</li>
</ul>
<h4>26 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#11b6bd8effd101bc84fd65cb117f69f8a96c6d1a">
<span class="deleted-file">
−
Dockerfile-aarch64
</span>
</a>
</li>
<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
</a>
</li>
<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#303d4b9f99e07a366aaca29d2205665e68f5a93d">
aligner_seed_policy.cpp
</a>
</li>
<li class="file-stats">
<a href="#057e0784d807c7b84958635ddeeb5003f2751ece">
aln_sink.cpp
</a>
</li>
<li class="file-stats">
<a href="#23fe7d40df390744370c0e80c2bcc72a078c6b0a">
alphabet.cpp
</a>
</li>
<li class="file-stats">
<a href="#f20480bd22275c372d93bee8d208a2b7943b6485">
alphabet.h
</a>
</li>
<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
</a>
</li>
<li class="file-stats">
<a href="#20032103dc113eacde067d1154cc770339598f43">
bowtie2
</a>
</li>
<li class="file-stats">
<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
</a>
</li>
<li class="file-stats">
<a href="#622d3bcfba0df0e4ae8a0849416ed2d2cf987528">
bowtie2-inspect
</a>
</li>
<li class="file-stats">
<a href="#999fd61d6ccb4c3bc242370d11e9095438b9e1d1">
bt2_build.cpp
</a>
</li>
<li class="file-stats">
<a href="#d1904db8401bf0137951f60c3d4a34a7cf8e2e84">
bt2_idx.h
</a>
</li>
<li class="file-stats">
<a href="#6026283a643bf7fb08c2ef0b797486df93cf0698">
bt2_search.cpp
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#e33a359b2250338a44f94e503c89a57a2fcf0a61">
debian/include/simde/check.h
</a>
</li>
<li class="file-stats">
<a href="#7f14f27f137afc966f4bc01f6a90943718d5c61f">
<span class="new-file">
+
debian/include/simde/debug-trap.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#94dc1cb87c9661f0660c872c1dda8027840ccdc4">
debian/include/simde/simde-arch.h
</a>
</li>
<li class="file-stats">
<a href="#be62058e8e6ab93904815fafc4491680ed01fddb">
debian/include/simde/simde-common.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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