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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/proteinortho">Debian Med / proteinortho</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec">b85c2b5b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-04T11:36:44+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">tweak patch
</pre>
</li>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#d7195c08d6c1cbdc57ce147094855c0ede6279ae">
debian/patches/deb_diamond
</a>
</li>
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<h4>Changes:</h4>
<li id="d7195c08d6c1cbdc57ce147094855c0ede6279ae">
<a href="https://salsa.debian.org/med-team/proteinortho/-/commit/b85c2b5b0e3ca409ddc2d0fb3fc9e212107649ec#d7195c08d6c1cbdc57ce147094855c0ede6279ae"><strong>debian/patches/deb_diamond</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ Author: Michael R. Crusoe <michael.crusoe@gmail.com></td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Description: Find some Debian packaged software under their original names</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- proteinortho.orig/proteinortho6.pl</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ proteinortho/proteinortho6.pl</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">@@ -5<span class="idiff left right">35,6 +535</span>,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -5<span class="idiff left right">48,6 +548</span>,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> $NC="";</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,3 +23,12 @@ Description: Find some Debian packaged software under their original names</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> echo "$(ORANGE)diamond missing, skipping...$(NC)"; \</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> else \</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> ./proteinortho6.pl -silent -force -project=test_diamond -p=diamond test/*.faa; \</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="p">@@ -274,7 +274,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> fi</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> @echo -n " [4/12] -p=diamond (--moresensitive) test (subparaBlast): "</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @if [ "$(shell which diamond)" = "" ]; then\</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @if [ "$(shell which diamond-aligner)" = "" ]; then\</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> echo "$(ORANGE)diamond missing, skipping...$(NC)"; \</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> else \</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> ./proteinortho6.pl -silent -force -project=test_diamondmoresensitive -p=diamond -subparaBlast="--more-sensitive" test/*.faa; \</span></pre>
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