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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/9479b32767b942fdb24d65623bcd34e8876ecab7">9479b327</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:10:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.0.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/dbf79424a0086e9fbe5eb1af42ed51da53a40476">dbf79424</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:10:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/e7e3ab9beced48b7c9a5354f6f0ead03e141821e">e7e3ab9b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:10:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/4.0.0'
Update to upstream version '4.0.0'
with Debian dir 62eef3c55b39c70030912ed9b4ffa428424e0b44</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/909da6a18d787fb3026ee14e489e08ee628a0e8f">909da6a1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Freshen our patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/461eb84fb50bf4d6bba6214f33ab4cfb53a1d58f">461eb84f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/06dbcf9729f28fbc0cc2de23e5b4701c76432af5">06dbcf97</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/9f4bba3a02d818c720caeda6275fdaa1ac40ecdc">9f4bba3a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/copyright: use spaces rather than tabs to start continuation lines.
Fixes: lintian: tab-in-license-text
See-also: https://lintian.debian.org/tags/tab-in-license-text.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/059b3d753e5a4c20e1e7a0198899fab156ccc862">059b3d75</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/567a40d6042791e6edde644ef2cbe3e544a1fd2d">567a40d6</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T09:23:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">don't modify the upstream tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/1cf310a3ca826b6db6b71a01c59ed8f1b57b9968">1cf310a3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T10:18:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Repository, Repository-Browse
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/0b6ca8509683030f58093dc0dd02ed40d305b3b2">0b6ca850</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T13:49:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">python3-chardet is no longer needed
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/46d27b7b1c0020db4180d6ae9eeccb4186258c86">46d27b7b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-06T13:57:06+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 4.0.0-1 to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#43bce5830afffd9cb2acc8dc5edc5294f813bf08">
debian/patches/debianize_docs
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<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
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<li class="file-stats">
<a href="#162e41e7c3dcfdb5813c4718e3f8503d4861a8ba">
debian/patches/remove-pathlib2-dep
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<li class="file-stats">
<a href="#f4070871ab416a70e58371fc9d9f790447d3b978">
<span class="deleted-file">
−
debian/patches/schema_salad
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#bbcb48e2be151813ceeaaec7eadcaf824b49c1c6">
debian/patches/setting_version.patch
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<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
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<li class="file-stats">
<a href="#cb805f74cef9b2dafa0758f976c0bcadda0b7dde">
debian/patches/version.patch
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">
docker/Dockerfile.py
</a>
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<li class="file-stats">
<a href="#f6fd38662d0696a7f4554040b8fec01f4f63546b">
docs/gettingStarted/quickStart.rst
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<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
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<li class="file-stats">
<a href="#d63af81d4e1b4246829e11ffc8c2ccbb0cd7797d">
docs/vendor/sphinxcontrib/fulltoc.py
</a>
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#42e82db8dfc40fc9f2df468cc92584cb0441719f">
src/toil/__init__.py
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<li class="file-stats">
<a href="#59062b9d0a92eb7800de569b9a6c8818efe8a415">
src/toil/batchSystems/abstractBatchSystem.py
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<li class="file-stats">
<a href="#e80ba9107fbe8c247c4a06d919de60d903b13b57">
src/toil/batchSystems/abstractGridEngineBatchSystem.py
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<li class="file-stats">
<a href="#8665892a623b484a6317e6aef58200c3f489951b">
src/toil/batchSystems/gridengine.py
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<li class="file-stats">
<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">
src/toil/batchSystems/kubernetes.py
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<li class="file-stats">
<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">
src/toil/batchSystems/lsf.py
</a>
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<li class="file-stats">
<a href="#da04225838d2734baa1efa5147660ca1e6d2df14">
src/toil/batchSystems/lsfHelper.py
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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