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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/fieldbioinformatics">Debian Med / fieldbioinformatics</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/ab136665cf4a03da3fa7b8ca7130ecd3e9a73731">ab136665</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-08T14:41:53+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove accidentally included backupfile from emacs(?)
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</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/f1462993dc41e09bed4517e508987d5bbd08b938">f1462993</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-08T14:46:00+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cme fix dpkg-control
</pre>
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<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/b7cf27e555c8f9727376925ada62bdb31c07d8b7">b7cf27e5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-08T14:46:56+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Strip overlong description (we have only 80 characters) and put missing information into long description
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<strong><a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/commit/4cd36dd8c2c193d121e0aa5d392f803529a4fd41">4cd36dd8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-08T14:47:43+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">No get-orig-source needed - watch file is perfectly working
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#230d9e9ae3d65fac2d6416d0f2b9694faedae433">
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−
debian/#copyright#
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="230d9e9ae3d65fac2d6416d0f2b9694faedae433">
<a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/c2429c23f1968130727c1cfac806042d89216b4c...4cd36dd8c2c193d121e0aa5d392f803529a4fd41#230d9e9ae3d65fac2d6416d0f2b9694faedae433"><strong>debian/#copyright#</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Upstream-Name: fieldbioinformatics</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Source: https://github.com/artic-network/fieldbioinformatics</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Copyright: 2016 Will Rowe <w.rowe@bham.ac.uk></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Copyright: 2020 Malihe Asemani <ml.asemani@gmail.com></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">License: MIT</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/c2429c23f1968130727c1cfac806042d89216b4c...4cd36dd8c2c193d121e0aa5d392f803529a4fd41#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: fieldbioinformatics</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Malihe Asemani <ml.asemani@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12)</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">1.4</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/fieldbioinformatics</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/fieldbioinformatics.git</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Homepage: https://github.com/artic-network/fieldbioinformatics</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Package: fieldbioinformatics</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Architecture: any</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Depends: ${shlibs:Depends}, ${misc:Depends}</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Description: ARTIC bioinformatics pipeline for working with virus sequencing data sequenced with nanopore</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> This package provides a pipeline for working with virus sequencing data, sequenced with nanopore.</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> Nanopore is a complete bioinformatics protocol to take the output from the sequencing protocol to</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> consensus genome sequences. Includes basecalling, de-multiplexing, mapping, polishing and consensus</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> generation.</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Description: pipeline for working with virus sequencing data sequenced with nanopore</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> This is the ARTIC bioinformatics pipeline for working with virus sequencing</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> data, sequenced with nanopore. Nanopore is a complete bioinformatics</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> protocol to take the output from the sequencing protocol to consensus</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> genome sequences. Includes basecalling, de-multiplexing, mapping, polishing</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> and consensus generation.</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/fieldbioinformatics/-/compare/c2429c23f1968130727c1cfac806042d89216b4c...4cd36dd8c2c193d121e0aa5d392f803529a4fd41#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,7 +25,3 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"># do_stuff_for_testing</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">#endif</span></pre>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">#get-orig-source:</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"># . debian/get-orig-source</span></pre>
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