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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/pufferfish">Debian Med / pufferfish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/7f94c76949fbc590cc1ea65399bf665d70a13929">7f94c769</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-22T13:54:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">tweak setcover
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/90b8271a9556b1a086b09e13e87b04aa605abe57">90b8271a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-23T19:22:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix build
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/e44594ef955e2020611dfd468d987cd6c083ae90">e44594ef</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-23T19:35:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Manual install
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/e7fe0f0cf12e3741fcf16cb8b2f1dbe9fd9b7e55">e7fe0f0c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-02-28T17:32:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">1.1.0 needs kseq.h
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/951fa07bee9cced354a10ce8946446ee8eeacef0">951fa07b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:31:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">TODO: ask upstream to upgrade their use of spdlog, cereal, and fmt
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/1d581d72e4fa2a4856981a9f19df653d46c59c42">1d581d72</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:32:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/7623c3d14702ec12203ea170bfd8652a9d1023ad">7623c3d1</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:32:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/f41d4ad9371d7a4fcb0be8a122683576ed99fcc0">f41d4ad9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:32:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.0'
Update to upstream version '1.1.0'
with Debian dir a991f5eb8073c3c94955c1d9cb7fd955b684974e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/4b9d626e69f1980b96658f61304dd26921a98755">4b9d626e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:32:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/edd1f81a498c93f7fb44e80396b901f6de7c72f5">edd1f81a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:33:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/4c8d8923a7cf6da4b460f1b70bdd017cb60797c5">4c8d8923</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:33:01+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/d8b410da9821f2b6fdcf47caaec5af914650e628">d8b410da</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:33:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/78ff9d656b9af736014ac81ad2ef79a26aeb531b">78ff9d65</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:33:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make "Files: *" paragraph the first in the copyright file.
Fixes: lintian: global-files-wildcard-not-first-paragraph-in-dep5-copyright
See-also: https://lintian.debian.org/tags/global-files-wildcard-not-first-paragraph-in-dep5-copyright.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/4753abe04273082a20c95ed91fb2189e09481147">4753abe0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T16:33:41+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">clean up changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/88716addc4473d358c376506045fff699def41fe">88716add</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T17:06:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">delete rpath
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/4ccf437d247f71b58bc9c31d2d7f50ea1445ee02">4ccf437d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-03-01T17:51:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cleanup copyright
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#366a0637b34a0ce059bdd6ed4afb42df8eaf325e">
<span class="deleted-file">
−
bin/fixFasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#9d9aaaac3f06acf1a05e3b67781afe64b64a22f7">
<span class="deleted-file">
−
debian/doc-base
</span>
</a>
</li>
<li class="file-stats">
<a href="#68d8c5c6babbf5cf109b2584c454449dbff75772">
<span class="new-file">
+
debian/install
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5d7130a87d819a848732eeb001d32bed52f914f">
debian/patches/use-debian-libs
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#b05a13d547dca02a3a175af0ca173edcb6c1cfc8">
include/ProgOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#c4d7fdcc35daf07fcc1ca0d4aa58e38a4ce4168f">
include/PuffAligner.hpp
</a>
</li>
<li class="file-stats">
<a href="#90d9889548353380c5f27a807e12057452f96e71">
include/Util.hpp
</a>
</li>
<li class="file-stats">
<a href="#e5c73b7ac891a33bc98ed7be442701cea9aa30a6">
include/cereal/access.hpp
</a>
</li>
<li class="file-stats">
<a href="#8288a84ad4ff379fc384cecb9f94153755af1e72">
include/cereal/archives/binary.hpp
</a>
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<li class="file-stats">
<a href="#c47f11a5efca2a45561cc5720a2291efe82d12b7">
include/cereal/archives/json.hpp
</a>
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<li class="file-stats">
<a href="#0a7e41f2150fd785fe2a55a1b2283565b520ea2d">
include/cereal/archives/portable_binary.hpp
</a>
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<li class="file-stats">
<a href="#b7c79dacb45cc6cd52f2b7e60bf90b2e475da35f">
include/cereal/archives/xml.hpp
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<li class="file-stats">
<a href="#04d39a23b9312f28dcbd6cbf3a8ed1ae0d6f4bae">
include/cereal/cereal.hpp
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<li class="file-stats">
<a href="#ecfbe4bd5c46ecaefff920f951df5999a7f3991c">
include/cereal/details/helpers.hpp
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<li class="file-stats">
<a href="#05ce4f40149eafbb88ab6668b2a827ef9512c879">
include/cereal/details/polymorphic_impl.hpp
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<li class="file-stats">
<a href="#f55c37af2efb30286b2af360257fdf8913433ad1">
include/cereal/details/static_object.hpp
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<li class="file-stats">
<a href="#a173ee6c9e40de50fb6e924c04ee35bc3263a157">
include/cereal/details/traits.hpp
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<li class="file-stats">
<a href="#6e51214871773d3643fdce3e718b4abbbc36f96b">
include/cereal/external/base64.hpp
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<li class="file-stats">
<a href="#66c4054d080f95d250068d210bc7263e7c0e981d">
include/cereal/external/rapidjson/allocators.h
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<li class="file-stats">
<a href="#5927a5aef956a009b3be742e28df7be46e12d7fc">
include/cereal/external/rapidjson/document.h
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<a href="#ee50c42c25fcc064f9a582416ad3cfe00d5433d7">
include/cereal/external/rapidjson/encodedstream.h
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<a href="#08173ce9b81ca4c2f571d0067f95f7f88a02b430">
include/cereal/external/rapidjson/encodings.h
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<a href="#c4b88c6f637d4fdbdce345499e8df68238bf5cf1">
include/cereal/external/rapidjson/error/error.h
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<a href="#14a458812f9072c2d4d539ac0fdb57a51708bfe2">
include/cereal/external/rapidjson/filereadstream.h
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<li class="file-stats">
<a href="#c207febf28bb0fc3d45188793a05cb41d0f18c95">
include/cereal/external/rapidjson/filewritestream.h
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<h5>The diff was not included because it is too large.</h5>
</div>
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