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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23118c59da162c2124bbb4741cb716c41165de95">23118c59</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-08T01:45:12+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23118c59da162c2124bbb4741cb716c41165de95#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 07 Apr 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 08 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23118c59da162c2124bbb4741cb716c41165de95#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 07 Apr 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 08 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,7 +10,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> biomaj3-download | 3.1.0 | 3.1.2 | Olivier Sallou | Olivier Sallou | 2019-11-12 13:19:24+00</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> cwltool | 2.0.20200224214940 | 3.0.20200324120055 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00</span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00</span>
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16
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,7 +48,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200326.ea0808a | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> python-skbio | 0.5.5 | 0.5.6 | Andreas Tille,Kevin Murray,Tim Booth | Michael R. Crusoe | 2020-02-28 14:48:20+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,7 +62,7 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,7 +87,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> bwa | 942447 | normal | Build bwa on ppc64el</span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed</span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out</span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> cwltool | 954496 | serious | cwltool: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7 3.8" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> dawg | 903886 | important | dawg: Test suite fails</span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> dcmtk | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -147,7 +144,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> ismrmrd | 863168 | important | ismrmrd FTBFS on armhf: 1 failure is detected in the test module "ISMRMRD Unit Tests"</span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> jellyfish1 | 875328 | wishlist | jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined</span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> khmer | 851830 | minor | arm64 has flaky tests</span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> khmer | 955566 | serious | khmer: autopkgtest regression: undefined references</span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> kineticstools | 936797 | serious | kineticstools: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> kissplice | 936798 | serious | kissplice: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> kmc | 954270 | important | kmc: arm64 autopkgtest time out</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,6 +170,7 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> mipe | 890788 | minor | mipe: Please provide autopkgtest</span>
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> mriconvert | 617342 | normal | 32-bit multiframe image conversion ignores frames</span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> mypy | 952757 | minor | mypy(1): build errors in man page</span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> nanopolish | 956136 | serious | nanopolish: FTBFS (undefined references)</span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> ncbi-blast+ | 891197 | normal | Please switch to pcre2</span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want Cn3D++</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> ncbi-vdb | 952627 | serious | libncbi-vdb2 uses undefined symbols</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,7 +219,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> python-pbcore | 919052 | normal | python-pbcore: some docs for pbcore are not found</span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> python-pysam | 938092 | normal | python-pysam: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> python-ruffus | 841073 | wishlist | python-ruffus: Needs 18 GB of RAM to build</span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> python-skbio | 951222 | serious | scikit-learn breaks python-skbio autopkgtest: skbio.stats.distance._permdisp.permdisp</span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> python-tinyalign | 952603 | normal | python-tinyalign: license of buildwheels.sh is CC0</span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> q2cli | 954601 | serious | q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= nosetests3" returned exit code 13</span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> q2-demux | 950933 | normal | q2-demux: FTBFS with pandas 1.0: test failures</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -267,5 +263,5 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext">(19<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext">(19<span class="idiff left right">6</span> rows)</span>
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271
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"></span></pre>
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