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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/42e38a524d0a4bf8ec884dbd8c36dee1d830708f">42e38a52</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-04-09T10:40:29+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Exclude lazy_property to make Sphinx succeed.
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<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/13a15261cc8ba2b641dcfaf1410a298f60d5f496">13a15261</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-04-09T11:17:36+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#260fb267aa59c740952b443e87e306a192a8d82e">
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+
debian/patches/workaround_sphinx_issue.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/caead8780e5149207dd9a62053f960d6080b73ae...13a15261cc8ba2b641dcfaf1410a298f60d5f496#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">snakemake (5.10.0-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Rebecca N. Palmer ] </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Exclude lazy_property to make Sphinx succeed.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Closes: #955056</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 09 Apr 2020 11:09:24 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">snakemake (5.10.0-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload.</span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/snakemake/-/compare/caead8780e5149207dd9a62053f960d6080b73ae...13a15261cc8ba2b641dcfaf1410a298f60d5f496#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,3 +11,4 @@</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">0011-fix-privacy-breach.patch</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">boto3_is_just_boto</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">python3</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">workaround_sphinx_issue.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/snakemake/-/compare/caead8780e5149207dd9a62053f960d6080b73ae...13a15261cc8ba2b641dcfaf1410a298f60d5f496#260fb267aa59c740952b443e87e306a192a8d82e"><strong>debian/patches/workaround_sphinx_issue.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: "Rebecca N. Palmer" <rebecca_palmer@zoho.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Date: Wed, 8 Apr 2020 22:13:19 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/955056</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Description: An upstream comment says common.py:lazy_property is the problem item, </span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> and excluding that from the documentation does make Sphinx succeed (I </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> haven't tested a whole build):</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> This is obviously not an ideal fix, but it's an internal class with little</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> documentation to begin with: https://snakemake.readthedocs.io/en/stable/api_reference/internal/snakemake.html#snakemake.common.lazy_property</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff">--- a/docs/conf.py</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/conf.py</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -107,6 +107,8 @@</span> pygments_style = 'sphinx'</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # If true, keep warnings as "system message" paragraphs in the built documents.</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> #keep_warnings = False</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# skip internal class that Sphinx 2 can't process (#296)</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+autodoc_default_options = {'exclude-members': 'lazy_property'}</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> # -- Options for HTML output ----------------------------------------------</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span></pre>
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