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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1997e672b98b3054d8fb07ed7bbd161a0dc1c17">f1997e67</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T01:44:46+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1997e672b98b3054d8fb07ed7bbd161a0dc1c17#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 08 Apr 2020 13</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 09 Apr 2020 01</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1997e672b98b3054d8fb07ed7bbd161a0dc1c17#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 08 Apr 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Thu, 09 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -172,7 +172,6 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> metaphlan2-data | 839925 | important | metaphlan2-data: postinst deletes shipped file: /var/lib/metaphlan2-data/markers.fasta</span>
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<td class="diff-line-num old_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> mipe | 890788 | minor | mipe: Please provide autopkgtest</span>
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<td class="diff-line-num old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> mriconvert | 617342 | normal | 32-bit multiframe image conversion ignores frames</span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> mypy | 952757 | minor | mypy(1): build errors in man page</span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> nanopolish | 956136 | serious | nanopolish: FTBFS (undefined references)</span>
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<td class="diff-line-num old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> ncbi-blast+ | 891197 | normal | Please switch to pcre2</span>
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<td class="diff-line-num old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want Cn3D++</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -206,7 +205,6 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> prokka | 924128 | normal | prokka: creates world writable directory tree /var/lib/prokka/*</span>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> psychopy | 730810 | normal | psychopy: Movie support suboptimal</span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location</span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> psychopy | 953052 | important | psychopy: python2 dependencies</span>
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210
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> psychopy | 953053 | important | psychopy: missing python3 dependencies</span>
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211
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> pynast | 937488 | serious | pynast: Python2 removal in sid/bullseye</span>
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212
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,8 +219,8 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000</td>
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> python-pbcore | 919052 | normal | python-pbcore: some docs for pbcore are not found</span>
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222
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> python-pysam | 938092 | normal | python-pysam: Python2 removal in sid/bullseye</span>
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223
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> python-ruffus | 841073 | wishlist | python-ruffus: Needs 18 GB of RAM to build</span>
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224
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> python-tinyalign | 952603 | normal | python-tinyalign: license of buildwheels.sh is CC0</span>
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225
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> q2cli | 954601 | serious | q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST= nosetests3" returned exit code 13</span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> q2-cutadapt | 956220 | normal | FTBFS: FileNotFoundError</span>
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> q2-demux | 950933 | normal | q2-demux: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> q2templates | 950931 | normal | q2templates: FTBFS with pandas 1.0: test failures</span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> q2-types | 950932 | normal | q2-types: FTBFS with pandas 1.0: test failures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -255,6 +253,7 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> sprai | 943280 | normal | sprai: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> sra-sdk | 943231 | normal | sra-sdk: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'</span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> sumaclust | 956232 | normal | sumaclust: Last sequence of input is skipped on arm64</span>
</pre>
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> tree-puzzle | 806214 | normal | tree-puzzle: Package fails test suite</span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> tree-puzzle | 890790 | minor | tree-puzzle: Please provide autopkgtest</span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> tree-puzzle | 951984 | serious | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0. Use MPI_Get_address instead."</span>
</pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,5 +264,5 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000</td>
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext">(19<span class="idiff left right">5</span> rows)</span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext">(19<span class="idiff left right">4</span> rows)</span>
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269
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"></span></pre>
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