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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f5ad4d9bfbda0f655b50d6dedb6934b846c4b07">9f5ad4d9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-11T13:44:23+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f5ad4d9bfbda0f655b50d6dedb6934b846c4b07#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 11 Apr 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 11 Apr 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">7 | {imaging,covid-19</span>} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 97 | {<span class="idiff left right">covid-19,practice,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">6 | {covid-19,imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 97 | {<span class="idiff left right">imaging,covid-19,practice</span>} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 44 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 41 | {<span class="idiff left right">practice,laboratory,imaging,oncology,his,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 41 | {<span class="idiff left right">laboratory,imaging,his,practice,covid-19,oncology</span>} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> amide | 30 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 30 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicom3tools | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 2<span class="idiff left right">2</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | <span class="idiff left right">19</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 2<span class="idiff left right">1</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gnumed-server | <span class="idiff left right">21</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> ngs-sdk | 19 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> ncbi-entrez-direct | 14 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> hunspell-en-med | 13 | {tools} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> ncbi-entrez-direct | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> invesalius | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> king | 12 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> vtk-dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> pixelmed | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> cgview | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> ea-utils | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gasic | 10 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,62 +29,58 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> staden | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> biosig4c++ | 9 | {physics,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> biosig4c++ | 9 | {imaging,physics} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> cgview | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> gdcm | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> king-probe | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> psychopy | 9 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> dazzdb | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> mipe | 8 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> mipe | 8 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> paml | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> parsnp | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> plastimatch | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> arden | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> bppsuite | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> tree-puzzle | 8 | {cloud,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> dazzdb | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> diamond-aligner | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> fitgcp | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> phast | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> radiant | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> obitools | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> salmon | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> tree-puzzle | 7 | {bio,cloud,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> abacas | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> anfo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> biomaj3-daemon | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> arden | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> embassy-domainatrix | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> fastlink | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> freecontact | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> fastlink | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> neobio | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> norsp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> prime-phylo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> pscan-tfbs | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> seqtools | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> tracetuner | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> abacas | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> alter-sequence-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> ampliconnoise | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> bandage | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> bio-rainbow | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> codonw | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> daligner | 5 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> daligner | 5 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> embassy-domsearch | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> fastml | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> freebayes | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> freecontact | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,27 +89,31 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> maqview | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> melting | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> melting | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> placnet | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> prime-phylo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> pscan-chip | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> seer | 5 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> sibsim4 | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> sigma-align | 5 | {<span class="idiff left right">cloud,bio,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> sibsim4 | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> sigma-align | 5 | {<span class="idiff left right">bio-phylogeny,bio,cloud</span>} | </span>
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> sumatra | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> vsearch | 5 | {bio} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> beads | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> bio-tradis | 4 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> bitseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> centrifuge | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> clonalframeml | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> clonalframeml | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> cluster3 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> delly | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,7 +124,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> mapsembler2 | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> mapsembler2 | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> mencal | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> mlv-smile | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,24 +135,21 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> probabel | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> repeatmasker-recon | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> saint | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> spread-phy | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> squizz | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> transtermhp | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> treeview | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> treeview | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> cufflinks | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> dicompyler | 3 | {oncology} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> jmodeltest | 3 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> jmodeltest | 3 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> libgff | 3 | {bio-dev} | </span>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> libminc | 3 | {imaging-dev} | </span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -170,17 +166,19 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> prottest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> prottest | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> samblaster | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> saint | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> scythe | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> segemehl | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> sickle | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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182
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> transrate-tools | 3 | {bio} | </span>
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183
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> blasr | 2 | {bio-ngs,bio} | </span>
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184
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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185
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> igor | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,12 +193,12 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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195
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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196
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> qrisk2 | 2 | {practice} | </span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> roguenarok | 2 | {bio} | </span>
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200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> rtax | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> rtax | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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201
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> runcircos-gui | 2 | {bio} | </span>
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202
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> scrm | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> seqmagick | 2 | {bio,covid-19} | </span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> seqmagick | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> sga | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> snap-aligner | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> soapaligner | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> spaced | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -218,7 +216,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> biosig4c++ | 1 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> embassy-phylip | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> kma | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -229,8 +227,8 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> orthanc-postgresql | 1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> python-questplus | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,8 +236,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> tree-puzzle | 1 | {bio-phylogeny,bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> velvetoptimiser | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> acedb | 0 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> augur | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -250,11 +247,11 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> emmax | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="plaintext"> fasta3 | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> fasta3 | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> libbio-mage-utils-perl | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,7 +269,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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273
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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277
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274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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278
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275
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -289,19 +286,19 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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290
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287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> mia | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> milib | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> multiqc | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext"> oscar | 0 | {<span class="idiff left right">data,tools,practice</span>} | </span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> oscar | 0 | {<span class="idiff left right">practice,data,tools</span>} | </span>
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> python-py2bit | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> seqan | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -310,12 +307,13 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"> solvate | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="plaintext"> spaln | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> spaln | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="plaintext"> trim-galore | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"> volpack | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="plaintext"> bustools | -1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="plaintext"> relion | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext">(34<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext">(34<span class="idiff left right">3</span> rows)</span>
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<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9f5ad4d9bfbda0f655b50d6dedb6934b846c4b07#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 11 Apr 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 11 Apr 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> bbmap | 38.79 | 38.8<span class="idiff left right">0</span> | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> bbmap | 38.79 | 38.8<span class="idiff left right">1</span> | Andreas Tille | Andreas Tille | 2020-02-27 11:08:04+00</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> biobambam2 | 2.0.160 | 2.0.162+ds | Andreas Tille | Andreas Tille | 2020-03-27 10:34:45+00</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,9 +13,9 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> charls | 2.0.0 | 2.1.0 | Andreas Tille | Andreas Tille | 2019-01-10 20:10:56+00</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> cyvcf2 | 0.11.6 | 0.11.7 | Liubov Chuprikova,Steffen Moeller | Andreas Tille | 2020-03-30 09:03:56+00</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> fastp | 0.20.0 | 0.20.1 | Dylan Aïssi | Dylan Aïssi | 2019-07-22 13:49:23+00</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200330.e99c5d7 | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,6 +30,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> kissplice | 2.4.0-p1 | 2.5.0 | Andreas Tille,David Parsons | Saira Hussain | 2019-08-14 21:04:51+00</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> kma | 1.2.21 | 1.2.22 | Andreas Tille | Steffen Moeller | 2020-01-17 22:54:10+00</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200405.630f312 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> libmaus2 | 2.0.713 | 2.0.715 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-03-27 09:34:39+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,7 +40,7 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> minia | 3.2.1+git20191130.5b131b9 | 3.2.1+git20200409.489e374 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-12-16 09:04:06+00</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> ncbi-entrez-direct | 12.0.20190816 | 13.5.20200326 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200<span class="idiff left right">328</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> plink2 | 2.00~a3-200217 | 200<span class="idiff left right">409</span> | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> pybel | 0.14.5 | 0.14.6 | Steffen Moeller | Andreas Tille | 2020-03-29 18:48:55+00</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-04-03 16:34:56+00</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,8 +49,12 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> python-pbcore | 1.7.1+git20200313.41ba394 | 1.7.1+git20200408.0579ac1 | Andreas Tille | Steffen Moeller | 2020-03-21 19:39:08+00</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> python-rdflib-jsonld | 0.4.0 | 0.5.0 | Michael R. Crusoe | Andreas Tille | 2019-09-04 15:04:36+00</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> python-xopen | 0.8.4 | 0.9.0 | Andreas Tille | Steffen Moeller | 2019-11-05 15:34:45+00</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,13 +63,13 @@ Last-Update: Sat, 11 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> snakemake | 5.10.0 | 5.14.0 | Kevin Murray | Andreas Tille | 2020-04-09 09:34:37+00</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00</span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> sra-sdk | 2.9.3 | 2.10.5 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext">(6<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext">(6<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> source | id | severity | title </span>
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