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<h3>

Rebecca N. Palmer pushed to branch debian_for_upstream_5.14.0_which_requires_conda

at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9">e7d154fa</a></strong>

<div>

<span>by Rebecca N. Palmer</span>

<i>at 2020-04-11T11:24:08+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Privacy: use local dagre-d3, add missing Javascript dependencies,

don't appear to show live status when we don't.

</pre>

</li>

</ul>

<h4>16 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">

debian/README.source

</a>

</li>

<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

</a>

</li>

<li class="file-stats">

<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

debian/control

</a>

</li>

<li class="file-stats">

<a href="#1548825d34f08adcfa12441745daf04242e258f2">

<span class="deleted-file">

−

debian/patches/0011-fix-privacy-breach.patch

</span>

</a>

</li>

<li class="file-stats">

<a href="#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803">

debian/patches/0003-Use-debian-s-mathjax-package.patch

→

debian/patches/local_javascript.patch

</a>

</li>

<li class="file-stats">

<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

debian/patches/series

</a>

</li>

<li class="file-stats">

<a href="#f5999b64458ec07ecd849ecbc103871fc3e621d5">

debian/snakemake.install

</a>

</li>

<li class="file-stats">

<a href="#9482f99c1d4b04010b42416f0371a719c8383536">

<span class="deleted-file">

−

debian/svg/get-svgs

</span>

</a>

</li>

<li class="file-stats">

<a href="#a7b4f0b3606d855926d7684b3fb05175f7d20fe7">

<span class="deleted-file">

−

debian/svg/install_with-bioconda-brightgreen.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#1e33221e5312dcd2d018d9dc3d7d865e046752b6">

<span class="deleted-file">

−

debian/svg/johanneskoester_follow.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#44750d3b53c59275209993fe35a10a1f505542ed">

<span class="deleted-file">

−

debian/svg/master.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#7d6c3c46fa1f7b49645737abf40ef458d2c73b05">

<span class="deleted-file">

−

debian/svg/pyversions_snakemake.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#7013779d1ccefcc04498e3d0088b58601d6f72c6">

<span class="deleted-file">

−

debian/svg/snakemake.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#cd5fd009f9c78420d6304e228aeb331883a39758">

<span class="deleted-file">

−

debian/svg/snakemake_gt_3.5.2-brightgreen.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#09c21e2638f9e08fa64125ddfc3fb73de0479e2c">

<span class="deleted-file">

−

debian/svg/stack-overflow-orange.svg

</span>

</a>

</li>

<li class="file-stats">

<a href="#1b07988becaddc13bd4a09eecdc35158fd5cb3d7">

<span class="deleted-file">

−

debian/svg/status.svg

</span>

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="cf9802e192b48f765b1b5c8268d550d89c933053">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#cf9802e192b48f765b1b5c8268d550d89c933053"><strong>debian/README.source</strong></a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">The documentation for snakemake contains potential privacy breach issues</span>

</pre>

</td>

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<tr class="line_holder old" id="" style="line-height: 1.6;">

<td class="diff-line-num old old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

2

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">since it is refering to external active code.  Most of these are dealt</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

3

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">with in 0011-fix-privacy-breach.patch.  Here are the remaining issues:</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Use of external Javascript etc (privacy issue):</span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

5

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">  1. Package python3-theano contains</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

6

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">        /usr/lib/python3/dist-packages/theano/d3viz/js/dagre-d3.min.js</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">     which could be used to replace</span>

</pre>

</td>

</tr>

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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

8

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">        http://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.js</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

9

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">     However, simply adding a python3-theano dependency sounds obscure.  So</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

10

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">     rather https://github.com/cpettitt/dagre-d3 should be packaged seprately.</span>

</pre>

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11

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">  2. JavaScript library</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

12

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">        https://silviomoreto.github.io/bootstrap-select/</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

13

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">     should be packaged to solve the two remaining issues.</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

14

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

15

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org>  Tue, 12 Dec 2017 11:32:28 +0100</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">- report.html, table.html: several</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">- gui.html: mostly fixed but one remains,</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">    https://silviomoreto.github.io/bootstrap-select/</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

6

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

17

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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

7

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Missing (optional) dependencies:</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

8

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>

</pre>

</td>

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</table>

<br>

</li>

<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,6 +18,8 @@ snakemake (5.14.0-1) UNRELEASED; urgency=medium</td>

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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">  * Update d/copyright, remove no longer needed Files-Excluded.</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

19

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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

19

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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">  * Enable verbose test output.</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

20

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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

20

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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">  * Update dependencies, add minimal-Depends test.</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

21

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">  * Privacy: use local dagre-d3, add missing Javascript dependencies,</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

22

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">    don't appear to show live status when we don't.</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

21

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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

23

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

22

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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> -- Rebecca N. Palmer <rebecca_palmer@zoho.com>  Thu, 09 Apr 2020 14:57:00 +0100</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

23

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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

25

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"></span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,8 +54,11 @@ Rules-Requires-Root: no</td>

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<td class="diff-line-num old_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

54

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<td class="diff-line-num new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

54

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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Package: snakemake</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

55

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<td class="diff-line-num new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

55

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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext">Architecture: all</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

56

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<td class="diff-line-num new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

56

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Depends: ca-certificates,</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

57

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">         libjs-bootstrap,</span>

</pre>

</td>

</tr>

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<td class="diff-line-num old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

57

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<td class="diff-line-num new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

58

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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">         libjs-d3,</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

59

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">         libjs-jquery,</span>

</pre>

</td>

</tr>

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<td class="diff-line-num old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

58

</td>

<td class="diff-line-num new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

60

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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext">         libjs-mathjax,</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

61

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">         node-dagre-d3-renderer,</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

59

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<td class="diff-line-num new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

62

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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">         python3-appdirs,</span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

60

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<td class="diff-line-num new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

63

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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">         python3-configargparse,</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

61

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<td class="diff-line-num new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

64

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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">         python3-datrie,</span>

</pre>

</td>

</tr>

</table>

<br>

</li>

<li id="1548825d34f08adcfa12441745daf04242e258f2">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#1548825d34f08adcfa12441745daf04242e258f2"><strong>debian/patches/0011-fix-privacy-breach.patch</strong>

deleted

</a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>

</pre>

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2

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Tue, 12 Dec 2017 09:02:44 +0100</span></span>

</pre>

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3

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Description: Avoid privacy breach</span></span>

</pre>

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4

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> Remark: The replacement of the icons might lead to kind of outdated</span>

</pre>

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5

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"> information in the local copy of the docs.  The tradeoff enhanced privacy</span>

</pre>

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6

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> is probably worth it since most probably will read up to date docs</span>

</pre>

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7

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> online anyway.</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

8

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> .</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

9

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> This patch does not solve all issues.  The remaining ones are discussed</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

10

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> in debian/README.source.</span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

11

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"></span>

</pre>

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12

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff">--- snakemake.orig/snakemake/gui.html</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

13

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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ snakemake/snakemake/gui.html</span></span>

</pre>

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14

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="p">@@ -3,7 +3,7 @@</span></span>

</pre>

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15

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff">     <head></span>

</pre>

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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff">         <title>Snakemake</title></span>

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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff">         <script type="text/javascript" src="file:///usr/share/javascript/jquery/jquery.min.js"></script></span>

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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        <script type="text/javascript" src="http://cdnjs.cloudflare.com/ajax/libs/d3/3.4.6/d3.min.js"></script></span></span>

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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+        <script type="text/javascript" src="file:///usr/share/javascript/d3/d3.min.js"></script></span></span>

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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff">         <script type="text/javascript" src="http://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.js"></script></span>

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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- snakemake.orig/docs/index.rst</span></span>

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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ snakemake/docs/index.rst</span></span>

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="p">@@ -4,13 +4,13 @@</span></span>

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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> Snakemake</span>

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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"> =========</span>

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda</span></span>

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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.. image:: file:///usr/share/doc/snakemake/html/_svg/install_with-bioconda-brightgreen.svg</span></span>

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff">     :target: https://bioconda.github.io/recipes/snakemake/README.html</span>

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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/pypi/pyversions/snakemake.svg</span></span>

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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.. image:: file:///usr/share/doc/snakemake/html/_svg/pyversions_snakemake.svg</span></span>

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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff">     :target: https://www.python.org</span>

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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/pypi/v/snakemake.svg</span></span>

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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.. image:: file:///usr/share/doc/snakemake/html/_svg/snakemake.svg</span></span>

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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff">     :target: https://pypi.python.org/pypi/snakemake</span>

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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"> .. image:: https://img.shields.io/docker/cloud/build/snakemake/snakemake</span>

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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"><span class="p">@@ -19,7 +19,7 @@</span></span>

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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"> .. image:: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=master</span>

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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff">     :target: https://github.com/snakemake/snakemake/actions?query=branch%3Amaster+workflow%3ACI</span>

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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/badge/stack-overflow-orange.svg</span></span>

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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.. image:: file:///usr/share/doc/snakemake/html/_svg/stack-overflow-orange.svg</span></span>

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<pre style="margin: 0;">-<span id="LC48" class="line" lang="diff">     :target: https://stackoverflow.com/questions/tagged/snakemake</span>

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<pre style="margin: 0;">-<span id="LC49" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC50" class="line" lang="diff"> .. image:: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow</span>

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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- snakemake.orig/docs/project_info/citations.rst</span></span>

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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ snakemake/docs/project_info/citations.rst</span></span>

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<pre style="margin: 0;">-<span id="LC53" class="line" lang="diff"><span class="p">@@ -38,7 +38,7 @@</span></span>

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<pre style="margin: 0;">-<span id="LC54" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC55" class="line" lang="diff"> If you publish a Snakemake workflow, consider to add this badge to your project page:</span>

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<pre style="margin: 0;">-<span id="LC56" class="line" lang="diff"> </span>

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<pre style="margin: 0;">-<span id="LC57" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat</span></span>

</pre>

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58

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<pre style="margin: 0;">-<span id="LC58" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.. image:: file:///usr/share/doc/snakemake/html/_svg/snakemake_gt_3.5.2-brightgreen.svg</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC59" class="line" lang="diff">    :target: https://snakemake.readthedocs.io</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff"> </span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

61

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<pre style="margin: 0;">-<span id="LC61" class="line" lang="diff"> The markdown syntax is</span></pre>

</td>

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</table>

<br>

</li>

<li id="3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#3a60a3d8ad77c5d7b9f50f6d9e07887ec385a803"><strong>debian/patches/0003-Use-debian-s-mathjax-package.patch</strong>

→

<strong>debian/patches/local_javascript.patch</strong>

</a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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1

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">From: Kevin Murray <spam@kdmurray.id.au></span></span>

</pre>

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2

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Date: Mon, 14 Sep 2015 00:12:40 +1000</span></span>

</pre>

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3

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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Subject: Use local javascript/css as appropriate j</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Use local Javascript etc for privacy</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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2

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"></span>

</pre>

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5

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">Use debian's mathjax package</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

6

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">---</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> docs/conf.py       | 3 +++</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

8

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> snakemake/gui.html | 6 +++---</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

9

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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> 2 files changed, 6 insertions(+), 3 deletions(-)</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

3

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Some of the badge images legally could be replaced with local copies,</span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

4

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">but this would appear to be a live status when it isn't</span></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

5

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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">(or</span> a per-version status that is easy to forget to update),</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">so use text links instead</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

7

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

8

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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">Author: Kevin Murray <spam@kdmurray.id.au>, Andreas Tille <tille@debian.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com></span>

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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">Forwarded: no</span></span>

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"></span>

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff">--- snakemake.orig/docs/conf.py</span>

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ snakemake/docs/conf.py</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,13 +28,73 @@ Use debian's mathjax package</td>

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff">         <title>Snakemake</title></span>

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-        <script type="text/javascript" src="http://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.1/jquery.min.js"></script></span></span>

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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff">         <link rel="stylesheet" type="text/css" href="http://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.5.4/bootstrap-select.min.css"/></span>

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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff">         <style></span>

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<pre style="margin: 0;"> <span id="LC42" class="line" lang="diff">         body {</span>

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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/docs/index.rst</span></span>

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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/index.rst</span></span>

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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="p">@@ -4,33 +4,14 @@</span></span>

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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> Snakemake</span>

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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"> =========</span>

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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> </span>

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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda</span></span>

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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://bioconda.github.io/recipes/snakemake/README.html</span></span>

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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/pypi/pyversions/snakemake.svg</span></span>

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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://www.python.org</span></span>

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/pypi/v/snakemake.svg</span></span>

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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://pypi.python.org/pypi/snakemake</span></span>

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/docker/cloud/build/snakemake/snakemake</span></span>

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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-       :target: https://hub.docker.com/r/snakemake/snakemake</span></span>

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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=master</span></span>

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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://github.com/snakemake/snakemake/actions?query=branch%3Amaster+workflow%3ACI</span></span>

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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/badge/stack-overflow-orange.svg</span></span>

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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://stackoverflow.com/questions/tagged/snakemake</span></span>

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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow</span></span>

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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://twitter.com/search?l=&q=%23snakemake%20from%3Ajohanneskoester</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/github/stars/snakemake/snakemake?style=social</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :alt: GitHub stars</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-    :target: https://github.com/snakemake/snakemake/stargazers</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. .. raw:: html</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-          <span class="__dimensions_badge_embed__" data-doi="https://doi.org/10.1093/bioinformatics/bts480" data-legend="always" data-style="large_rectangle"></span><script async src="https://badge.dimensions.ai/badge.js" charset="utf-8"></script></span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`Bioconda <https://bioconda.github.io/recipes/snakemake/README.html>`_</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`PyPI <https://pypi.python.org/pypi/snakemake>`_</span></span>

</pre>

</td>

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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`Docker <https://hub.docker.com/r/snakemake/snakemake>`_</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`CI status <https://github.com/snakemake/snakemake/actions?query=branch%3Amaster+workflow%3ACI>`_</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`Stack Overflow <https://stackoverflow.com/questions/tagged/snakemake>`_</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

81

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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`Twitter <https://twitter.com/search?l=&q=%23snakemake%20from%3Ajohanneskoester>`_</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`GitHub stars <https://github.com/snakemake/snakemake/stargazers>`_</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

83

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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+`Paper <https://doi.org/10.1093/bioinformatics/bts480>`_</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> </span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"> The Snakemake workflow management system is a tool to create **reproducible and scalable** data analyses.</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"> Workflows are described via a human readable, Python based language.</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/docs/project_info/citations.rst</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/project_info/citations.rst</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

89

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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"><span class="p">@@ -36,10 +36,7 @@</span> And my PhD thesis which describes all algorithmic details:</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> Project Pages</span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> =============</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"> </span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-If you publish a Snakemake workflow, consider to add this badge to your project page:</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.. image:: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-   :target: https://snakemake.readthedocs.io</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+If you publish a Snakemake workflow, consider adding a link to `the documentation <https://snakemake.readthedocs.io>`_ with `this badge <https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat>`_ to your project page.</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"> </span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"> The markdown syntax is</span>

</pre>

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<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"> </span></pre>

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</li>

<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>

<hr>

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<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">0001-Use-the-inbuild-sphinx.ext.napoleon.patch</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

2

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<td class="diff-line-num new_line old" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"><span class="idiff left right">0003-Use-debian-s-mathjax-package</span>.patch</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

2

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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"><span class="idiff left right">local_javascript</span>.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0003-Compat-fix.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">0006-restore-bin.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">0008-remove_sphinx.ext.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

6

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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

6

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">0009-skip-test-without-google-cloud-sdk.patch</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

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<td class="diff-line-num new_line old" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">0011-fix-privacy-breach.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

8

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7

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">python3.patch</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

9

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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

8

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">workaround_sphinx_issue.patch</span></pre>

</td>

</tr>

</table>

<br>

</li>

<li id="f5999b64458ec07ecd849ecbc103871fc3e621d5">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#f5999b64458ec07ecd849ecbc103871fc3e621d5"><strong>debian/snakemake.install</strong></a>

<hr>

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<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">build</span><span class="o" style="font-weight: 600;">/</span><span class="nx">sphinx</span><span class="o" style="font-weight: 600;">/</span><span class="nx">html</span>       <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">snakemake</span></span></pre>

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2

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">svg</span><span class="o" style="font-weight: 600;">/*.</span><span class="nx">svg</span>        <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">snakemake</span><span class="o" style="font-weight: 600;">/</span><span class="nx">html</span><span class="o" style="font-weight: 600;">/</span><span class="nx">_svg</span></span></pre>

</td>

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</table>

<br>

</li>

<li id="9482f99c1d4b04010b42416f0371a719c8383536">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#9482f99c1d4b04010b42416f0371a719c8383536"><strong>debian/svg/get-svgs</strong>

deleted

</a>

<hr>

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1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/sh</span></span>

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2

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Download some images referenced by the docs locally to avoid</span></span>

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># potential privacy breaches</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> <span class="k" style="font-weight: 600;">*</span>.svg</span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

5

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg <span class="nt" style="color: #000080;">-O</span> install_with-bioconda-brightgreen.svg</span>

</pre>

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6

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://img.shields.io/pypi/pyversions/snakemake.svg <span class="nt" style="color: #000080;">-O</span> pyversions_snakemake.svg</span>

</pre>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://img.shields.io/pypi/v/snakemake.svg</span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://img.shields.io/twitter/follow/johanneskoester.svg?style<span class="o" style="font-weight: 600;">=</span>social<span class="se" style="color: #d14;">\&</span><span class="nv" style="color: #008080;">label</span><span class="o" style="font-weight: 600;">=</span>Follow <span class="nt" style="color: #000080;">-O</span> johanneskoester_follow.svg</span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://img.shields.io/badge/snakemake-≥3.5.2-brightgreen.svg?style<span class="o" style="font-weight: 600;">=</span>flat-square <span class="nt" style="color: #000080;">-O</span> snakemake_gt_3.5.2-brightgreen.svg</span>

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://quay.io/repository/snakemake/snakemake/status <span class="nt" style="color: #000080;">-O</span> status.svg</span>

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell">wget <span class="nt" style="color: #000080;">-q</span> https://circleci.com/bb/snakemake/snakemake/tree/master.svg?style<span class="o" style="font-weight: 600;">=</span>shield <span class="nt" style="color: #000080;">-O</span> master.svg</span></pre>

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<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#a7b4f0b3606d855926d7684b3fb05175f7d20fe7"><strong>debian/svg/install_with-bioconda-brightgreen.svg</strong>

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">xmlns:xlink=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xlink"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"128"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><clipPath</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"128"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></clipPath><g</span> <span class="na" style="color: #008080;">clip-path=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h69v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#4c1"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M69 0h59v20H69z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h128v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"110"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"355"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"590"</span><span class="nt" style="color: #000080;">></span>install with<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"355"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"590"</span><span class="nt" style="color: #000080;">></span>install with<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"975"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"490"</span><span class="nt" style="color: #000080;">></span>bioconda<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"975"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"490"</span><span class="nt" style="color: #000080;">></span>bioconda<span class="nt" style="color: #000080;"></text></g></span> <span class="nt" style="color: #000080;"></svg></span></span></pre>

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<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#1e33221e5312dcd2d018d9dc3d7d865e046752b6"><strong>debian/svg/johanneskoester_follow.svg</strong>

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<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

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<li id="44750d3b53c59275209993fe35a10a1f505542ed">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#44750d3b53c59275209993fe35a10a1f505542ed"><strong>debian/svg/master.svg</strong>

deleted

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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"102"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><mask</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"102"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></mask><g</span> <span class="na" style="color: #008080;">mask=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h49v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#4c1"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M49 0h53v20H49z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h102v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"11"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"24.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"15"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span><span class="nt" style="color: #000080;">></span>circleci<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"24.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"14"</span><span class="nt" style="color: #000080;">></span>circleci<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"74.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"15"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span><span class="nt" style="color: #000080;">></span>passing<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"74.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"14"</span><span class="nt" style="color: #000080;">></span>passing<span class="nt" style="color: #000080;"></text></g></svg></span></span></pre>

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<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="new_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

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<li id="7d6c3c46fa1f7b49645737abf40ef458d2c73b05">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#7d6c3c46fa1f7b49645737abf40ef458d2c73b05"><strong>debian/svg/pyversions_snakemake.svg</strong>

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">xmlns:xlink=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xlink"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"76"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><clipPath</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"76"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></clipPath><g</span> <span class="na" style="color: #008080;">clip-path=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h49v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#007ec6"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M49 0h27v20H49z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h76v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"110"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"255"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"390"</span><span class="nt" style="color: #000080;">></span>python<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"255"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"390"</span><span class="nt" style="color: #000080;">></span>python<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"615"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"170"</span><span class="nt" style="color: #000080;">></span>3.5<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"615"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"170"</span><span class="nt" style="color: #000080;">></span>3.5<span class="nt" style="color: #000080;"></text></g></span> <span class="nt" style="color: #000080;"></svg></span></span></pre>

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<tr class="line_holder old-nonewline" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="new_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>

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<br>

</li>

<li id="7013779d1ccefcc04498e3d0088b58601d6f72c6">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#7013779d1ccefcc04498e3d0088b58601d6f72c6"><strong>debian/svg/snakemake.svg</strong>

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</a>

<hr>

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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">xmlns:xlink=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xlink"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"78"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><clipPath</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"78"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></clipPath><g</span> <span class="na" style="color: #008080;">clip-path=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h33v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#007ec6"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M33 0h45v20H33z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h78v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"110"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"175"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"230"</span><span class="nt" style="color: #000080;">></span>pypi<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"175"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"230"</span><span class="nt" style="color: #000080;">></span>pypi<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"545"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"350"</span><span class="nt" style="color: #000080;">></span>v4.3.1<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"545"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"350"</span><span class="nt" style="color: #000080;">></span>v4.3.1<span class="nt" style="color: #000080;"></text></g></span> <span class="nt" style="color: #000080;"></svg></span></span></pre>

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<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="new_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>

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<br>

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<li id="cd5fd009f9c78420d6304e228aeb331883a39758">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#cd5fd009f9c78420d6304e228aeb331883a39758"><strong>debian/svg/snakemake_gt_3.5.2-brightgreen.svg</strong>

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</a>

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">xmlns:xlink=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xlink"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"120"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><g</span> <span class="na" style="color: #008080;">shape-rendering=</span><span class="s" style="color: #d14;">"crispEdges"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h73v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#4c1"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M73 0h47v20H73z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"110"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"375"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"630"</span><span class="nt" style="color: #000080;">></span>snakemake<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"955"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"370"</span><span class="nt" style="color: #000080;">></span>≥3.5.2<span class="nt" style="color: #000080;"></text></g></span> <span class="nt" style="color: #000080;"></svg></span></span></pre>

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<tr class="line_holder old-nonewline" id="" style="line-height: 1.6;">

<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="new_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>

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<li id="09c21e2638f9e08fa64125ddfc3fb73de0479e2c">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#09c21e2638f9e08fa64125ddfc3fb73de0479e2c"><strong>debian/svg/stack-overflow-orange.svg</strong>

deleted

</a>

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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">xmlns:xlink=</span><span class="s" style="color: #d14;">"http://www.w3.org/1999/xlink"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"96"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><clipPath</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"96"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></clipPath><g</span> <span class="na" style="color: #008080;">clip-path=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h39v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fe7d37"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M39 0h57v20H39z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h96v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"110"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"205"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"290"</span><span class="nt" style="color: #000080;">></span>stack<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"205"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"290"</span><span class="nt" style="color: #000080;">></span>stack<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"665"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"150"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"470"</span><span class="nt" style="color: #000080;">></span>overflow<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"665"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"140"</span> <span class="na" style="color: #008080;">transform=</span><span class="s" style="color: #d14;">"scale(.1)"</span> <span class="na" style="color: #008080;">textLength=</span><span class="s" style="color: #d14;">"470"</span><span class="nt" style="color: #000080;">></span>overflow<span class="nt" style="color: #000080;"></text></g></span> <span class="nt" style="color: #000080;"></svg></span></span></pre>

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<td class="old_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="new_line diff-line-num" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa"></td>

<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>

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</table>

<br>

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<li id="1b07988becaddc13bd4a09eecdc35158fd5cb3d7">

<a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9#1b07988becaddc13bd4a09eecdc35158fd5cb3d7"><strong>debian/svg/status.svg</strong>

deleted

</a>

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<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1

</td>

<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC1" class="line" lang="xml"><span class="nt" style="color: #000080;"><svg</span> <span class="na" style="color: #008080;">xmlns=</span><span class="s" style="color: #d14;">"http://www.w3.org/2000/svg"</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"106"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span><span class="nt" style="color: #000080;">><linearGradient</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"b"</span> <span class="na" style="color: #008080;">x2=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">y2=</span><span class="s" style="color: #d14;">"100%"</span><span class="nt" style="color: #000080;">><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"0"</span> <span class="na" style="color: #008080;">stop-color=</span><span class="s" style="color: #d14;">"#bbb"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/><stop</span> <span class="na" style="color: #008080;">offset=</span><span class="s" style="color: #d14;">"1"</span> <span class="na" style="color: #008080;">stop-opacity=</span><span class="s" style="color: #d14;">".1"</span><span class="nt" style="color: #000080;">/></linearGradient><mask</span> <span class="na" style="color: #008080;">id=</span><span class="s" style="color: #d14;">"a"</span><span class="nt" style="color: #000080;">><rect</span> <span class="na" style="color: #008080;">width=</span><span class="s" style="color: #d14;">"106"</span> <span class="na" style="color: #008080;">height=</span><span class="s" style="color: #d14;">"20"</span> <span class="na" style="color: #008080;">rx=</span><span class="s" style="color: #d14;">"3"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span><span class="nt" style="color: #000080;">/></mask><g</span> <span class="na" style="color: #008080;">mask=</span><span class="s" style="color: #d14;">"url(#a)"</span><span class="nt" style="color: #000080;">><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#555"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h63v20H0z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#97CA00"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M63 0h43v20H63z"</span><span class="nt" style="color: #000080;">/><path</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"url(#b)"</span> <span class="na" style="color: #008080;">d=</span><span class="s" style="color: #d14;">"M0 0h106v20H0z"</span><span class="nt" style="color: #000080;">/></g><g</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#fff"</span> <span class="na" style="color: #008080;">text-anchor=</span><span class="s" style="color: #d14;">"middle"</span> <span class="na" style="color: #008080;">font-family=</span><span class="s" style="color: #d14;">"DejaVu Sans,Verdana,Geneva,sans-serif"</span> <span class="na" style="color: #008080;">font-size=</span><span class="s" style="color: #d14;">"11"</span><span class="nt" style="color: #000080;">><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"32.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"15"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span><span class="nt" style="color: #000080;">></span>container<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"32.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"14"</span><span class="nt" style="color: #000080;">></span>container<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"83.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"15"</span> <span class="na" style="color: #008080;">fill=</span><span class="s" style="color: #d14;">"#010101"</span> <span class="na" style="color: #008080;">fill-opacity=</span><span class="s" style="color: #d14;">".3"</span><span class="nt" style="color: #000080;">></span>ready<span class="nt" style="color: #000080;"></text><text</span> <span class="na" style="color: #008080;">x=</span><span class="s" style="color: #d14;">"83.5"</span> <span class="na" style="color: #008080;">y=</span><span class="s" style="color: #d14;">"14"</span><span class="nt" style="color: #000080;">></span>ready<span class="nt" style="color: #000080;"></text></g></svg></span></span></pre>

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