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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/minimap2">Debian Med / minimap2</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/66dd911ac2d783a9c88a6897fcbe3d17b71971b7">66dd911a</a></strong>
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<span>by Hamid Nassiby</span>
<i>at 2020-04-12T15:32:49+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete addLTO.patch
In relation to Bug #956136
https://bugs.debian.org/956136</pre>
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<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/30139300437abf89ccc7c6f9295ede965c733830">30139300</a></strong>
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<span>by Hamid Nassiby</span>
<i>at 2020-04-12T15:40:51+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update series
In relation to Bug #956136
https://bugs.debian.org/956136</pre>
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<h4>2 changed files:</h4>
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<a href="#8e5f8c498df3c5e717899d72b7c4ef9914754146">
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−
debian/patches/addLTO.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="8e5f8c498df3c5e717899d72b7c4ef9914754146">
<a href="https://salsa.debian.org/med-team/minimap2/-/compare/be7448d7435e51944a951a584bf7e187e15be2a0...30139300437abf89ccc7c6f9295ede965c733830#8e5f8c498df3c5e717899d72b7c4ef9914754146"><strong>debian/patches/addLTO.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Author: Steffen Moeller</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-14 23:04:54 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Description: Add -flto flag</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">Index: minimap2/Makefile</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- minimap2.orig/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ minimap2/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -1,10 +1,11 @@</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAGS+= -g -Wall -O2 -Wc++-compat #-Wextra</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS+= -g -Wall -O2 -Wc++-compat -flto #-Wextra</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> CPPFLAGS+= -DHAVE_KALLOC</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> INCLUDES=</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> OBJS= kthread.o kalloc.o misc.o bseq.o sketch.o sdust.o options.o index.o chain.o align.o hit.o map.o format.o pe.o esterr.o splitidx.o ksw2_ll_sse.o</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> PROG= minimap2</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> PROG_EXTRA= sdust minimap2-lite</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> LIBS= -lm -lz -lpthread</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LDFLAGS+= -flto</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> OBJS+=ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_exts2_sse.o</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="p">@@ -29,7 +30,7 @@</span> all:$(PROG)</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> extra:all $(PROG_EXTRA)</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> minimap2:main.o libminimap2.a</span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) $(CFLAGS) main.o -o $@ -L. -lminimap2 $(LIBS) $(LDFLAGS)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) main.o -o $@ -L. -lminimap2 $(LIBS) $(LDFLAGS)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> </span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"> minimap2-lite:example.o libminimap2.a</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"> $(CC) $(CFLAGS) $< -o $@ -L. -lminimap2 $(LIBS) $(LDFLAGS)</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/minimap2/-/compare/be7448d7435e51944a951a584bf7e187e15be2a0...30139300437abf89ccc7c6f9295ede965c733830#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">hardening.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">do_not_use_natbib.bst.patch</span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">simde</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">addLTO.patch</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">ar.patch</span></pre>
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