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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9951f7857234b59c1cd9e29a2298ca03dcac8e35">9951f785</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-15T01:44:35+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9951f7857234b59c1cd9e29a2298ca03dcac8e35#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 14 Apr 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 15 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<li id="2654e31016bcee9bbe05d462121706cc8ed368af">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9951f7857234b59c1cd9e29a2298ca03dcac8e35#2654e31016bcee9bbe05d462121706cc8ed368af"><strong>outdated_med-packages.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 14 Apr 2020 13:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 15 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> source | version | upstream_version | uploaders | Last uploader | Last uploaded </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,7 +19,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> htseq | 0.11.3 | 0.11.4 | Andreas Tille,Diane Trout | Diane Trout | 2020-03-04 07:04:25+00</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> hyphy | 2.5.1 | 2.5.8 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> igdiscover | 0.11 | 0.12.3 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> igor | 1.3.0 | 1.4.0 | Steffen Moeller | Andreas Tille | 2019-01-26 17:51:04+00</span>
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23
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> igv | 2.4.17 | 2.8.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00</span>
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24
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> imagej | 1.52r | 1.52v | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -59,7 +58,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> resfinder-db | 0.0+git20191001.149209d | 0.0+git20200408.0322c0d | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> salmon | 0.12.0 | 1.2.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> seaview | 4.7 | 5.0.2 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00</span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> simde | 0.0.0.git.20200412 | 0.0.0.git.20200413 | Michael R. Crusoe | Michael R. Crusoe | 2020-04-13 09:04:31+00</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> simpleitk | 1.0.1 | 1.2.0 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:06:08+00</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> snakemake | 5.10.0 | 5.14.0 | Kevin Murray | Andreas Tille | 2020-04-09 09:34:37+00</span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> stacks | 2.52 | 2.53 | Andreas Tille,Tim Booth | Steffen Moeller | 2020-03-26 02:50:13+00</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,7 +66,7 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> unanimity | 3.3.0 | 4.2.0-1 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00</span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext">(6<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">(6<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> source | id | severity | title </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -93,6 +91,8 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> bwa | 942447 | normal | Build bwa on ppc64el</span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed</span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out</span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> clustalo | 956324 | serious | "clustalo: Bus error on mipsel"</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> cyvcf2 | 956675 | serious | cyvcf2: test failures on mipsel, ppc64el and s390x</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> dawg | 903886 | important | dawg: Test suite fails</span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure</span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> dcmtk | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -209,9 +209,7 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> psychopy | 953053 | important | psychopy: missing python3 dependencies</span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> pynast | 937488 | serious | pynast: Python2 removal in sid/bullseye</span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package</span>
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures</span>
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> python-biom-format | 950929 | normal | python-biom-format: FTBFS with pandas 1.0: test failures</span>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> python-biopython | 956324 | serious | python-biopython: FTBFS on mipsel</span>
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215
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> python-cobra | 955656 | serious | python-cobra: FTBFS: E ModuleNotFoundError: No module named 'matplotlib'</span>
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> python-cogent | 950474 | important | python-cogent FTBFS on armel and i386: test failures</span>
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<td class="diff-line-num old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> python-intervaltree-bio | 920545 | serious | python-intervaltree breaks python-intervaltree-bio autopkgtest</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -238,8 +236,6 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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236
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> sambamba | 948919 | serious | sambamba FTBFS: undefined reference to 'cram_to_bam'</span>
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<td class="diff-line-num old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
239
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> seqan2 | 892222 | normal | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta</span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem</span>
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241
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext"> seqsero | 955648 | serious | seqsero: FTBFS: build-dependency not installable: sra-toolkit</span>
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<td class="diff-line-num old old_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> sibelia | 956575 | serious | sibelia: binary-all FTBFS</span>
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<td class="diff-line-num old_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> sight | 954711 | wishlist | FTBFS with Boost 1.71</span>
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<td class="diff-line-num old_line" data-linenumber="244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> simka | 954273 | important | simka: arm64 autopkgtest time out</span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> simpleitk | 949355 | serious | simpleitk FTBFS: test failures</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -265,5 +261,5 @@ Last-Update: Tue, 14 Apr 2020 13:42:04 +0000</td>
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation</span>
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<td class="diff-line-num old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"</span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> xmedcon | 924017 | normal | desktop entry</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext">(19<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext">(19<span class="idiff left right">0</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"></span></pre>
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