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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/mafft">Debian Med / mafft</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/mafft/-/commit/f4c6de3a08451f56598cc4bc477b06ad28e2cda8">f4c6de3a</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2020-04-17T21:38:46+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch for GCC-10
</pre>
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<h4>2 changed files:</h4>
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<a href="#81a9a5b123fb5e9473f68e4733e9d389fa7872c9">
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+
debian/patches/gcc10.patch
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+
debian/patches/series
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<h4>Changes:</h4>
<li id="81a9a5b123fb5e9473f68e4733e9d389fa7872c9">
<a href="https://salsa.debian.org/med-team/mafft/-/commit/f4c6de3a08451f56598cc4bc477b06ad28e2cda8#81a9a5b123fb5e9473f68e4733e9d389fa7872c9"><strong>debian/patches/gcc10.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Fix package to build with GCC-10</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/core/defs.c</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/core/defs.c</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">@@ -170,6 +170,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> int compacttree = 0;</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> int lhlimit = INT_MAX;</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> int specifictarget = 0;</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-int nadd = 0; // <- static in tbfast.c, pairlocalalign.c</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern int nadd = 0; // <- static in tbfast.c, pairlocalalign.c</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> int usenaivescoreinsteadofalignmentscore = 0;</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> int nthreadreadlh = 1;</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/core/makedirectionlist.c</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/core/makedirectionlist.c</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="p">@@ -8,7 +8,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> #define END_OF_VEC -1</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-int nadd;</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extern int nadd;</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> double thresholdtorev;</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> int dodp;</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> int addfragment;</span></pre>
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<a href="https://salsa.debian.org/med-team/mafft/-/commit/f4c6de3a08451f56598cc4bc477b06ad28e2cda8#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gcc10.patch</span></pre>
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