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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/barrnap">Debian Med / barrnap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/barrnap/-/commit/9fa6fa87231829db10215df7f544138b8b7564b1">9fa6fa87</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-04-17T12:04:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add housekeeping work to d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/barrnap/-/commit/66577049f5ae53ba23be8e3c2cd929188f64d80b">66577049</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-04-17T12:05:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing DEP-12 fields
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/barrnap/-/commit/8b05f8a0e0514ad53f5b75d8626cadfea037adc4">8b05f8a0</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-04-17T12:05:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/barrnap/-/commit/c782bcd9e2485e7953b5aa2c679334546f89b733">c782bcd9</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-04-17T12:05:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump Standards-Version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/barrnap/-/commit/4e70e099dee804a03e45b5cbc4013b58db692470">4e70e099</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-04-17T12:06:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use fixed /usr/bin/perl in executable
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#1a63fe48bb7708476717051bf50aac4c30887d2c">
debian/patches/use_debian_dirs
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/barrnap/-/compare/4b08d930961e7ca45699c36d1bd40fe53b643ef6...4e70e099dee804a03e45b5cbc4013b58db692470#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">barrnap (0.9+dfsg-2) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add references to conda (Thanks Steffen Moeller).</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix EDAM syntax (Thanks Andreas Tille).</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Bump Standards-Version.</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Use debhelper-compat 12.</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Use fixed /usr/bin/perl in executable.</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Add missing DEP-12 fields.</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Sascha Steinbiss <satta@debian.org> Fri, 17 Apr 2020 11:47:50 +0200</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">barrnap (0.9+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * New upstream release.</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/barrnap/-/compare/4b08d930961e7ca45699c36d1bd40fe53b643ef6...4e70e099dee804a03e45b5cbc4013b58db692470#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/barrnap/-/compare/4b08d930961e7ca45699c36d1bd40fe53b643ef6...4e70e099dee804a03e45b5cbc4013b58db692470#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,8 +3,11 @@ Priority: optional</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Uploaders: Sascha Steinbiss <satta@debian.org></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11), hmmer (>= 3.1), lua5.1, bedtools</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Standards-Version: 3.9.8</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> hmmer (>= 3.1),</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> lua5.1,</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> bedtools</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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8
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/barrnap</span>
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10
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/barrnap.git</span>
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<li id="1a63fe48bb7708476717051bf50aac4c30887d2c">
<a href="https://salsa.debian.org/med-team/barrnap/-/compare/4b08d930961e7ca45699c36d1bd40fe53b643ef6...4e70e099dee804a03e45b5cbc4013b58db692470#1a63fe48bb7708476717051bf50aac4c30887d2c"><strong>debian/patches/use_debian_dirs</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: <span class="idiff left right">Do not rely on path location relative to barrnap executable </span></span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: <span class="idiff left right">Make sure we use correct paths for Debian policy</span></span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/bin/barrnap</span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/bin/barrnap</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env perl</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/perl</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> use strict;</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> use warnings;</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> use List::Util qw(max);</span>
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="p">@@ -14,6 +14,9 @@</span></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> my $AUTHOR = 'Torsten Seemann';</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> my $URL = 'https://github.com/tseemann/barrnap';</span>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/barrnap/-/compare/4b08d930961e7ca45699c36d1bd40fe53b643ef6...4e70e099dee804a03e45b5cbc4013b58db692470#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/tseemann/barrnap/issues</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/tseemann/barrnap/issues/new</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Repository: https://github.com/tseemann/barrnap</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> - Name: SciCrunch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Entry: SCR_015995</span>
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