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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/kineticstools">Debian Med / kineticstools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kineticstools/-/commit/e9ec1f71829025a118739a39a32dd4f0d61db7bb">e9ec1f71</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-04-19T15:08:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ressources moved to /usr/lib/python3.8
This triggered errors at installation because they were formerly
pulled from /usr/lib/python3.7 which ended up being missing.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kineticstools/-/commit/c94ff7b5a1770e8291a38cef37af47973439a920">c94ff7b5</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-04-19T15:22:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">added patch to fix testing
this removes parallelization arguments as they seem to break the
testing procedure at t time. Hopefully this is temporary.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/kineticstools/-/commit/f59fbc0e8f8bddd4e02aa0cf507a6613fcf6c9fb">f59fbc0e</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-04-19T15:28:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">documented changes in d/changelog
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#e13fb3816d36f1fa3157b4c4499bd6dc6a76e6b2">
<span class="new-file">
+
debian/patches/fix-pytest-unrecognized-arg.patch
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</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kineticstools/-/compare/c8ec3aa79618286f72cec23cc17d88e37634dfe3...f59fbc0e8f8bddd4e02aa0cf507a6613fcf6c9fb#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,6 +30,11 @@ kineticstools (0.6.1+git20200325.3558942-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> update)</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> * Build-Depends: python3-pytest-runner</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> [ Etienne Mollier ]</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> * Patched to remove parallelization from build test</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> * Adapted ressources coming from usr/lib/python3.8 instead of the former</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> version usr/lib/python3.7.</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Sun, 19 Apr 2020 13:03:11 +0200</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">kineticstools (0.6.1+git20180425.27a1878-2) unstable; urgency=medium</span>
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<li id="e13fb3816d36f1fa3157b4c4499bd6dc6a76e6b2">
<a href="https://salsa.debian.org/med-team/kineticstools/-/compare/c8ec3aa79618286f72cec23cc17d88e37634dfe3...f59fbc0e8f8bddd4e02aa0cf507a6613fcf6c9fb#e13fb3816d36f1fa3157b4c4499bd6dc6a76e6b2"><strong>debian/patches/fix-pytest-unrecognized-arg.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Removed test parallelization</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> Somehow, one of the components of the nosetest/pytest stack in python 3.8</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> seems to not recognize properly distributed testing arguments to be passed to</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> pytest.py. It could be a bug on one of these components. Which one ? Not</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> sure for the moment, but trying to isolate pytest manually didn't allow to</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> reproduce the issue.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> .</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> For some reason the 'auto' option accompanying the -n flag disapeared in the</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> original error message:</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> pytest.py: error: unrecognized arguments: -n --dist=loadscope test</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="p">Author: Étienne Mollier <etienne.mollier@mailoo.org></span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kineticstools.orig/pytest.ini</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kineticstools/pytest.ini</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -4,4 +4,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> pybigwig: requires pyBigWig to be installed</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> addopts =</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- -v -n auto --dist=loadscope --durations=20 --junit-xml=nosetests.xml</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ -v --durations=20 --junit-xml=nosetests.xml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/kineticstools/-/compare/c8ec3aa79618286f72cec23cc17d88e37634dfe3...f59fbc0e8f8bddd4e02aa0cf507a6613fcf6c9fb#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fix-pytest-unrecognized-arg.patch</span>
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1
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">man-pages.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">tests-import.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">verbose-testing.patch</span>
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<a href="https://salsa.debian.org/med-team/kineticstools/-/compare/c8ec3aa79618286f72cec23cc17d88e37634dfe3...f59fbc0e8f8bddd4e02aa0cf507a6613fcf6c9fb#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,8 +26,7 @@ override_dh_auto_install:</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> mkdir -p $(MANDIR)/man1</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> rst2man doc/manual.rst > $(MANDIR)/man1/ipdSummary.1</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> mkdir -p debian/kineticstools-data/usr/share/kineticstools</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> mv debian/python3-kineticstools/usr/lib/python3.7/dist-packages/kineticsTools/resources debian/kineticstools-data/usr/share/kineticstools/</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> rm -r debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> mv debian/python3-kineticstools/usr/lib/python3.8/dist-packages/kineticsTools/resources debian/kineticstools-data/usr/share/kineticstools/</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_auto_clean</span>
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