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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/clustalo">Debian Med / clustalo</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/clustalo/-/commit/9c43fd1341dfbe127be2a2d506d5d26a8de63f0e">9c43fd13</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-04-19T09:33:46+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix memory leak that fixes a typoed ifdef and a missing free()
</pre>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#eadfff87faa47d046c62a60fd3043ff8361e24c5">
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+
debian/patches/memory_leak.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/clustalo/-/commit/9c43fd1341dfbe127be2a2d506d5d26a8de63f0e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,6 +3,7 @@ clustalo (1.2.4-6) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Matthew Fernand ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Fix some issues with logging calls</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Increase field boundaries to avoid out of range access</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Fix memory leak that fixes a typoed ifdef and a missing free()</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 17 Apr 2020 17:06:22 +0200</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<li id="eadfff87faa47d046c62a60fd3043ff8361e24c5">
<a href="https://salsa.debian.org/med-team/clustalo/-/commit/9c43fd1341dfbe127be2a2d506d5d26a8de63f0e#eadfff87faa47d046c62a60fd3043ff8361e24c5"><strong>debian/patches/memory_leak.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Matthew Fernandez <matthew.fernandez@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Date: Sat, 18 Apr 2020 13:15:49 -0700</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/956324</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Origin: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=956324#74</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Description: Fix memory leak that fixes a typoed ifdef and a missing free()</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- a/src/squid/clustal.c</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/squid/clustal.c</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -207,7 +207,7 @@</span> WriteClustal(FILE *fp, MSA *msa)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> int namelen; /* maximum name length used */</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> int pos; /* position counter */</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> #ifdef CLUSTALO</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- char *buf; /* buffer for writing seq */</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ char *buf = NULL; /* buffer for writing seq */</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> int cpl = msa->alen<iWrap ? msa->alen+10 : (iWrap > 0 ? iWrap : 60); /* char per line (< 64) */</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> #else</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> char buf[80]; /* buffer for writing seq */</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -410,8 +410,9 @@</span> WriteClustal(FILE *fp, MSA *msa)</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#ifdef CLUSTAL</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#ifdef CLUSTALO</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> free(piResCnt); piResCnt = NULL;</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ free(buf); buf = NULL;</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> return;</span></pre>
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<a href="https://salsa.debian.org/med-team/clustalo/-/commit/9c43fd1341dfbe127be2a2d506d5d26a8de63f0e#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">clustalo-log-format-calls.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">array_out_of_bounds.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">memory_leak.patch</span></pre>
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