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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/tree-puzzle">Debian Med / tree-puzzle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/c3548b3b584026c8c009236754ef561336791923">c3548b3b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix FTBFS due to the new MPI-3.0 API
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/c25c4a81bce5bc125dcd8c4c0594a4ea0edd2492">c25c4a81</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/c5597c73eb117a023b35e167a646e2efa4a2da0e">c5597c73</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/b710079357ba5afd0f821bf2af8605aadf1902c3">b7100793</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/678afc1f9d84bd36e08f4bbbab05f19e71d99b6e">678afc1f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: DEB_BUILD_OPTIONS allow override_dh_auto_test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/8f2781299f1b6b0387142f556c81bd16112d5584">8f278129</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/159aa18e5bc723d890531d734d67d11f9232ffd1">159aa18e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:07:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/a90aa82b5136f68a67036fc6f9373dfb42f9f53c">a90aa82b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-19T18:11:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#b95acbee183b215052351bb0c48f947c2096d8c0">
<span class="new-file">
+
debian/patches/fix-mpi3-build.patch
</span>
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</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">tree-puzzle (5.3~rc16+dfsg-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * New upstream pre-release</span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * Install test suite into examples package</span>
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Remove code copy of sprng from source package</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * debhelper-compat 12 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Secure URI in copyright format (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> update)</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> [ Alberto Garcia ]</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * debian/patches/fix-mpi3-build.patch:</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> - Fix FTBFS due to the new MPI-3.0 API (Closes: #951984).</span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 08 Jul 2019 16:47:12 +0200</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,13 +4,14 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Charles Plessy <plessy@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libopenmpi-dev,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libsprng2-dev</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">2.1</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5.0</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/tree-puzzle</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/tree-puzzle.git</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: http://www.tree-puzzle.de</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: tree-puzzle</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: TREE-PUZZLE</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Heiko A. Schmidt <heiko.schmidt@univie.ac.at></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: http://www.tree-puzzle.de</span>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#b95acbee183b215052351bb0c48f947c2096d8c0"><strong>debian/patches/fix-mpi3-build.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Alberto Garcia <berto@igalia.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Subject: Replace obsolete MPI-2.0 API with their MPI-3.0 equivalents</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/951984</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/ppuzzle.c</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/ppuzzle.c</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -21,11 +21,14 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> #define EXTERN extern</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define OMPI_OMIT_MPI1_COMPAT_DECLS 1</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> #include <mpi.h></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> #include <time.h></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> #include "ppuzzle.h"</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define MPI_Address MPI_Get_address</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define MPI_Type_struct MPI_Type_create_struct</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> int PP_IamMaster;</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> int PP_IamSlave;</span></pre>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_packaged_sprng.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">tests-need-bash.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">spelling.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">fix-mpi3-build.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,11 +20,13 @@ override_dh_install-arch:</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/$(ppkg)/usr/bin/$(ppkg)</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> # unfortunately most tests are failing for the moment</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> # the issue is documented in</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> # debian/patches/patch_test_results.patch</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> # and needs to be discussed with upstream</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> dh_auto_test || true</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">override_dh_installexamples:</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> rm -f tests/*.log tests/*.trs</span>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/7b5ed75af4be8e7b42b929989fc2222c124102f8...a90aa82b5136f68a67036fc6f9373dfb42f9f53c#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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