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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/33ae09f8c75c22614f5d44ec5c1c9fa75ea90621">33ae09f8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-20T13:45:07+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/33ae09f8c75c22614f5d44ec5c1c9fa75ea90621#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 20 Apr 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 20 Apr 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">9</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | <span class="idiff left right">40</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">9</span> | {practice,laboratory,imaging,his,covid-19,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">5</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">5</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | <span class="idiff left right">39</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">8</span> | {practice,laboratory,imaging,his,covid-19,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> amide | 29 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dcm2niix | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 29 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dcm2niix | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicom3tools | 26 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicom3tools | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 26 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> htsjdk | 25 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 21 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 17 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> htsjdk | 23 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gnumed-server | 20 | {practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> minc-tools | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> king | 15 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> openslide | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> adun.app | 14 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> king | 14 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> openslide | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> pixelmed | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> hunspell-en-med | 13 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> invesalius | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> gasic | 12 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> biosig4c++ | 11 | {imaging,physics} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> biosig4c++ | 12 | {imaging,physics} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> mia | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> vtk-dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> gasic | 11 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> vtk-dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> ea-utils | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> ncbi-entrez-direct | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> parsnp | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> fitgcp | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> librg-utils-perl | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> ea-utils | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> ncbi-entrez-direct | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> parsnp | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> staden | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> tree-puzzle | 9 | {bio,cloud,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> cgview | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> fitgcp | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> <span class="idiff left right">king-probe </span> | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> <span class="idiff left right">librg-utils-perl</span> | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> <span class="idiff left right">diamond-aligner | 7 | {bio,covid-19}</span> | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> <span class="idiff left right">jebl2 </span> | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> <span class="idiff left right">lagan | 7 | {bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> <span class="idiff left right">ncbi-seg </span> | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> <span class="idiff left right">salmon | 8 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> <span class="idiff left right">biojava-live</span> | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> <span class="idiff left right">fastlink | 7 | {bio,cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> <span class="idiff left right">king-probe</span> | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> neobio | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> norsp | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> paml | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> psychopy | 7 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> rambo-k | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> salmon | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> arden | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> ampliconnoise | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> cgview | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> cluster3 | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> dazzdb | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> fastlink | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> diamond-aligner | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> freebayes | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> melting | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> mrs | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> norsp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> orthanc-webviewer | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> predictprotein | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> pscan-tfbs | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> <span class="idiff left right">seqsero</span> | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> <span class="idiff left right">rambo-k</span> | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> sibsim4 | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> sigma-align | 6 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> sumatra | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> ampliconnoise | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> arden | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> bandage | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> bio-rainbow | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> bppsuite | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> centrifuge | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> codonw | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> embassy-domalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> embassy-domsearch | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> freebayes | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> freecontact | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> indelible | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> lib<span class="idiff left right">ncl | 5 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> lib<span class="idiff left right">minc | 5 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> maqview | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> mencal | 5 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> murasaki | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> placnet | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> poretools | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> prime-phylo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> pscan-chip | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> seer | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> seqsero | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> spread-phy | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> squizz | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> treeview | 5 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -109,35 +104,40 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> alter-sequence-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> beads | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> b<span class="idiff left right">rig | 4 | {bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> <span class="idiff left right">centrifuge</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> b<span class="idiff left right">io-tradis | 4 | {bio,bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> <span class="idiff left right">bitseq </span> | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> clonalframeml | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> daligner | 4 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> delly | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> dwgsim | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> e<span class="idiff left right">stscan | 4 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> e<span class="idiff left right">mbassy-domsearch | 4 | {bio,cloud}</span> | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> harvest-tools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> libsbml | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> libsmithwaterman | 4 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> mapsembler2 | 4 | {bio,cloud} | </span>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> mlv-smile | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> murasaki | 4 | {bio} | </span>
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> paraclu | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> perm | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> proalign | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> probabel | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> pscan-tfbs | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> radiant | 4 | {bio} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -146,25 +146,25 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> saint | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> sickle | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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151
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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152
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> tnseq-transit | 4 | {covid-19,bio} | </span>
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153
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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154
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153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> transrate-tools | 4 | {bio} | </span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> zalign | 4 | {bio,cloud} | </span>
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155
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> beast-mcmc | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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156
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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158
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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159
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> jmodeltest | 3 | {bio,bio-phylogeny} | </span>
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161
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> libgff | 3 | {bio-dev} | </span>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> libsmithwaterman | 3 | {bio} | </span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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166
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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167
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> mhap | 3 | {bio,bio-ngs} | </span>
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168
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> nutsqlite | 3 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -172,10 +172,10 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> phybin | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> prottest | 3 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> roguenarok | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -186,12 +186,12 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> soapsnp | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> vsearch | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> zalign | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -200,19 +200,15 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> kma | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> kmerresistance | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> lucy | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> mhap | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> samtools-legacy | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> stringtie | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="plaintext"> thesias | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> varscan | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> velvetoptimiser | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -231,14 +227,17 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> ngs-sdk | 1 | {bio-dev} | </span>
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228
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> orthanc-postgresql | 1 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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232
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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233
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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234
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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235
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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237
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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238
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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241
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> spaln | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> thesias | 1 | {bio,covid-19} | </span>
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> tree-puzzle | 1 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> acedb | 0 | {bio,cloud} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -312,5 +311,5 @@ Last-Update: Mon, 20 Apr 2020 01:42:04 +0000</td>
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311
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="plaintext"> bustools | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="plaintext">(3<span class="idiff left right">40</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext">(3<span class="idiff left right">39</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="plaintext"></span></pre>
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