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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/qcat">Debian Med / qcat</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/a8162170a313cd4b504fc8fa1e1144c67fd620d0">a8162170</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-04-22T09:32:47+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add test-depends, Dependency python3-parasail is missing
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qcat/-/commit/a8162170a313cd4b504fc8fa1e1144c67fd620d0#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">qcat (1.1.0-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> TODO: https://github.com/jeffdaily/parasail-python</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Apr 2020 09:11:59 +0200</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/qcat/-/commit/a8162170a313cd4b504fc8fa1e1144c67fd620d0#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,10 @@ Priority: optional</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python3,</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> python3-setuptools</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> python3-setuptools,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> python3-pytest-runner <!nocheck>,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> python3-pytest <!nocheck>,</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> python3-pytest-cov <!nocheck></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Standards-Version: 4.5.0</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/qcat</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/qcat.git</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,11 +18,12 @@ Homepage: https://github.com/nanoporetech/qcat</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Package: qcat</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> python3-parasail</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Description: demultiplexing Oxford Nanopore reads from FASTQ files</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> Qcat is a command-line tool for demultiplexing Oxford Nanopore reads</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> from FASTQ files. It accepts basecalled FASTQ files and splits the reads</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> into <span class="idiff left right">into </span>separate FASTQ files based on their barcode. Qcat makes the</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> into separate FASTQ files based on their barcode. Qcat makes the</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> demultiplexing algorithms used in albacore/guppy and EPI2ME available to</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> be used locally with FASTQ files. Currently qcat implements the EPI2ME</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> algorithm.<span class="idiff left right"> In the next version we will add the albacore/guppy algorithm.</span></span></pre>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> algorithm.</span></pre>
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