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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/qcat">Debian Med / qcat</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/f9416489f690aca67a32033aa1464ffb0a9eeb33">f9416489</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T11:40:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/a61b1330f4c29d28e921a0cbbcb22735279ca565">a61b1330</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T13:17:00+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try hard to get test running as autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/2701a2f05888adc9449902dd393b4ea0e60145e3">2701a2f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T13:17:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add ITP bug
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/6a5eb4a5233085f9f8298954245d2c935235e61d">6a5eb4a5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T14:30:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finally files should be in place and test should run
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/9d63accff2b1a3bf5528dab61f1e643e79a3b988">9d63accf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T14:31:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to new
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/qcat/-/commit/bec225ab35f0765509eb6da9cb80ebdbe4baa7c7">bec225ab</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-22T14:34:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add ending newline
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
debian/README.test
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bfabb2979c33f977a23d2753502796fbb9c1b865">
<span class="new-file">
+
debian/qcat-examples.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#dba6cc72d24207403d4136a0df5a3c17f42632ca">
<span class="new-file">
+
debian/qcat.docs
</span>
</a>
</li>
<li class="file-stats">
<a href="#30642aeeaf010b2f3841f45a90dffbb49e28b599">
<span class="new-file">
+
debian/qcat.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#6d530dffdf9eb20a493d5a6e87a68a3116f5fb76">
debian/manpages
→
debian/qcat.manpages
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">Notes</span> <span class="nx">on</span> <span class="nx">how</span> <span class="k" style="font-weight: 600;">this</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span><span class="o" style="font-weight: 600;">.</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="php"></span>
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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">installing</span> <span class="nx">qcat</span><span class="o" style="font-weight: 600;">-</span><span class="nx">examples</span> <span class="k" style="font-weight: 600;">and</span> <span class="nx">than</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"><span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="php"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="php"></span>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">qcat (1.1.0-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">qcat (1.1.0-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> TODO: https://github.com/jeffdaily/parasail-python</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #958458)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Apr 2020 <span class="idiff left right">09:11:59</span> +0200</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Apr 2020 <span class="idiff left right">14:31:27</span> +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,6 +25,7 @@ Depends: ${python3:Depends},</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> python3-biopython,</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> python3-parasail,</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> python3-yaml</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Suggests: qcat-examples</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Description: demultiplexing Oxford Nanopore reads from FASTQ files</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> Qcat is a command-line tool for demultiplexing Oxford Nanopore reads</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> from FASTQ files. It accepts basecalled FASTQ files and splits the reads</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,3 +33,20 @@ Description: demultiplexing Oxford Nanopore reads from FASTQ files</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> demultiplexing algorithms used in albacore/guppy and EPI2ME available to</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> be used locally with FASTQ files. Currently qcat implements the EPI2ME</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> algorithm.</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">Package: qcat-examples</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> python3-pytest,</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> python3-pytest-runner,</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> python3-pytest-cov</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">Enhances: qcat</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">Description: demultiplexing Oxford Nanopore reads from FASTQ files (examples)</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> Qcat is a command-line tool for demultiplexing Oxford Nanopore reads</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> from FASTQ files. It accepts basecalled FASTQ files and splits the reads</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> into separate FASTQ files based on their barcode. Qcat makes the</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> demultiplexing algorithms used in albacore/guppy and EPI2ME available to</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> be used locally with FASTQ files. Currently qcat implements the EPI2ME</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> algorithm.</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> This package contains examples to test qcat.</span></pre>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#bfabb2979c33f977a23d2753502796fbb9c1b865"><strong>debian/qcat-examples.install</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">pytest</span><span class="o" style="font-weight: 600;">.</span><span class="nx">ini</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qcat</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/</span><span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">qcat</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#dba6cc72d24207403d4136a0df5a3c17f42632ca"><strong>debian/qcat.docs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/README.test</span></pre>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#30642aeeaf010b2f3841f45a90dffbb49e28b599"><strong>debian/qcat.install</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">usr</span></span></pre>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#6d530dffdf9eb20a493d5a6e87a68a3116f5fb76"><strong>debian/manpages</strong>
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<strong>debian/qcat.manpages</strong>
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<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,28 +4,15 @@</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export LC_ALL=C.UTF-8</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"># this provides:</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"># DEB_SOURCE: the source package name</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"># DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM: the package's upstream version</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"># DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"># SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"># specified by <https://reproducible-builds.org/specs/source-date-epoch/></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"># for hardening you might like to uncomment this:</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">export PYBUILD_BEFORE_TEST=cp -r {dir}/$(DEB_SOURCE)/test {build_dir}/$(DEB_SOURCE) ;</span>
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19
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">%:</span>
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21
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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22
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">#override_dh_auto_test:</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"># do_stuff_for_testing</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">#endif</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">### If you **really** can not use uscan (even not with mode=git) use a debian/get-orig-script</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">#get-orig-source:</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"># . debian/get-orig-source</span></pre>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> find debian -name .coverage -delete</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> mkdir -p debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples/$(DEB_SOURCE)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> mv debian/$(DEB_SOURCE)/usr/lib/python3*/dist-packages/$(DEB_SOURCE)/test debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples/$(DEB_SOURCE)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> find debian -name __pycache__ -type d | xargs rm -rf</span></pre>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/qcat/-/compare/1b8e86c5aa8e74d0b4096a06eca293edf9bc8c7a...bec225ab35f0765509eb6da9cb80ebdbe4baa7c7#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#PACKAGENAME#</span></span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">qcat</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Double quote below to expand the temporary directory variable now versus</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># later is on purpose.</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># shellcheck disable=SC2064</span></span>
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12
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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13
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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14
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span>/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span></span>
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15
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#do_stuff_to_test_package#</span></span></span></pre>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="idiff left right">pytest-3</span></span></pre>
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