<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/salmon">Debian Med / salmon</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/salmon/-/commit/7e1f591374a0bcb0b1ec5e8e9183d01fadfe03ee">7e1f5913</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-22T18:58:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.1+ds1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#38df0d119dd4bbf9324a89a5240408ff37d2bfb3">
.drone/build.sh
</a>
</li>
<li class="file-stats">
<a href="#5da93d3ebfbadd620ae081fc5aa64ac8ac77097b">
<span class="new-file">
+
.lgtm.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#0834ae016f8fea5cff771880c0be1d55299732ff">
<span class="new-file">
+
CODE_OF_CONDUCT.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#34ffb03041dc818ba71da0518ec52a0134f543f8">
current_version.txt
</a>
</li>
<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#d2512a023edf5bc0bc15dc59b6ac10eae6a5dd2d">
doc/source/salmon.rst
</a>
</li>
<li class="file-stats">
<a href="#87a3a9314333c591d8bda7edee40ff4857d72464">
doc/steps_to_prepare_release.md
</a>
</li>
<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#3cbc10c17d78796adbdc9a8a8b8702f83a02d41f">
docker/build_test.sh
</a>
</li>
<li class="file-stats">
<a href="#2bc7c7c64784b968b1404d3f09805fe683f980b1">
include/AlevinOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#1fe0f4d55f3b84573f46c3b205cdf1546c6f1595">
include/AlevinUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#5cef8fa5ec1ece7a48a7915ced5deaf811bf19f5">
include/AlignmentLibrary.hpp
</a>
</li>
<li class="file-stats">
<a href="#2ac0e90145df8287bf8f2694a3e2af65d0939b0b">
include/AtomicMatrix.hpp
</a>
</li>
<li class="file-stats">
<a href="#190d99cc5ab950958653ebc379ba8a35f8e86031">
include/BAMQueue.tpp
</a>
</li>
<li class="file-stats">
<a href="#a9730033c96a73430dfa9e68a0a02623e62e903d">
include/BAMUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#b8cefe13f5ac0aa745cb59a74ce2fc13971bdb7f">
<span class="deleted-file">
−
include/BWAMemStaticFuncs.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c78c52b6ca0da95fdf8fb27b72d1bb6cb14ae41b">
<span class="deleted-file">
−
include/BWAUtils.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#27048b9f4b4bc7ae24299f0eb63849dddd8cebb3">
include/BarcodeGroup.hpp
</a>
</li>
<li class="file-stats">
<a href="#ba21e28a4a0fb90d1a8bc698ffc1d6360721d2ef">
include/CollapsedCellOptimizer.hpp
</a>
</li>
<li class="file-stats">
<a href="#a3e07d2ed2be80b241300903096d45955b061bb5">
include/EMUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#e37fb3c682d28a9b874eeff15aed1e64079a9767">
include/EquivalenceClassBuilder.hpp
</a>
</li>
<li class="file-stats">
<a href="#f05db237f9b821f31941b5ede8a2c432d8736b61">
include/GZipWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#110a7abfe616a8b35921a66cd4629aef122ccf09">
<span class="deleted-file">
−
include/KmerIntervalMap.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#163219d86bcfedd41dd06fe9c3091ca1e237ac4b">
<span class="deleted-file">
−
include/LightweightAlignmentDefs.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9efaa52fb8cfc2200aca0da88a29a02eee381226">
include/NullFragmentFilter.hpp
</a>
</li>
<li class="file-stats">
<a href="#cdef4370edd7b503d1d9ce34f786e4900aeb88dd">
include/ProgramOptionsGenerator.hpp
</a>
</li>
<li class="file-stats">
<a href="#584b1766692e6054a45025e3ab2a1cc01e4508f1">
include/ReadExperiment.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/salmon/-/commit/7e1f591374a0bcb0b1ec5e8e9183d01fadfe03ee">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/salmon/-/commit/7e1f591374a0bcb0b1ec5e8e9183d01fadfe03ee"}}</script>
</p>
</div>
</body>
</html>