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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pycoqc">Debian Med / pycoqc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pycoqc/-/commit/207fb55d0281b9151d7e75d8d7334eb0e1960598">207fb55d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-23T10:58:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix license
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pycoqc/-/commit/2ca8290d3555bb8fd7f8d4d614c73f1649169c65">2ca8290d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-23T11:13:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove non-fre documentation from upstream tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pycoqc/-/commit/114da524041cfd92d2db84bd2629bf00741c4fb0">114da524</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-23T11:14:00+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.0.21+dfsg</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/pycoqc/-/commit/4e8423438a2d5b198be03f7b053cd7d9ac647ced">4e842343</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-23T11:14:47+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.0.21+dfsg'
Update to upstream version '2.5.0.21+dfsg'
with Debian dir e902acc8d22981d6c980c44b8bfb76c874d0c62d</pre>
</li>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#8d251f4636f2a6c1c83c51c3f3f0d37e4af24cbc">
<span class="new-file">
+
debian/patches/remove_non_free_part_of_documentation.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#8d9f8e3327aa6d7d9e0c7039a3bf24bc78923070">
<span class="deleted-file">
−
docs/pycoQC/API_usage.ipynb
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">pycoqc (2.5.0.21-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">pycoqc (2.5.0.21<span class="idiff left right">+dfsg</span>-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #958459)</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
</pre>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: pycoqc</span>
</pre>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Source: https://github.com/a-slide/pycoQC/releases</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Files-Excluded: */pycoQC/API_usage.ipynb</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Copyright: Copyright 2019 Adrien Leger & Tommaso Leonardi</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">License: GPL-3<span class="idiff left right">+</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">License: GPL-3</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: debian/*</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Copyright: 2020 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">License: GPL-3<span class="idiff left right">+</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">License: GPL-3</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">License: GPL-3<span class="idiff left right">+</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">License: GPL-3</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> This program is free software: you can redistribute it and/or modify</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License, or</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> (at your option) any later version.</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License.</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> This program is distributed in the hope that it will be useful,</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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<li id="8d251f4636f2a6c1c83c51c3f3f0d37e4af24cbc">
<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#8d251f4636f2a6c1c83c51c3f3f0d37e4af24cbc"><strong>debian/patches/remove_non_free_part_of_documentation.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Wed, 22 Apr 2020 12:54:02 +0200</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: The file docs/pycoQC/API_usage.ipynb contains compressed JS and had</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> to be removed from the source tarball. Make sure it is not used inside the doc</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> which is refereing to an online replacement anyway</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">--- a/docs/pycoQC/usage.md</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/pycoQC/usage.md</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">@@ -10,7 +10,7 @@</span> The [Jupyter Notebook](https://jupyter.o</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> One of the specificity of pycoQC is to have a rich python API meant to be used directly inside a Jupyter notebook. The pycoQC API for Jupyter is very flexible and allows you to explore your nanopore data interactively and in more depth than with the command line interface.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-* [pycoQC API usage notebook](pycoQC/API_usage)</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+* pycoQC API usage notebook</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> An online live version of the usage notebook served by MyBinder is also available to familiarize with the package API:</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">unversioned_depends_tqdm.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">remove_non_free_part_of_documentation.patch</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">opts="<span class="idiff left right">repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz,</span>filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">https://github.com/a-slide/pycoQC/releases .*/archive/v?@ANY_VERSION@\.tar\.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/pycoqc/-/compare/5d03c28db473503a8f3f23f1465501ad1404a6e1...4e8423438a2d5b198be03f7b053cd7d9ac647ced#8d9f8e3327aa6d7d9e0c7039a3bf24bc78923070"><strong>docs/pycoQC/API_usage.ipynb</strong>
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