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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pauvre">Debian Med / python-pauvre</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/78a72c0eb90c81cc4d9762b82e5d51621872e477">78a72c0e</a></strong>
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<span>by Etienne Mollier</span>
<i>at 2020-04-25T19:36:42+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">using more robust absolute python path
Thanks Andreas for the tip!
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#25a3c88c3a261995f9bb84e2201424e3a58659b9">
debian/patches/test-local-pauvre.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="25a3c88c3a261995f9bb84e2201424e3a58659b9">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/78a72c0eb90c81cc4d9762b82e5d51621872e477#25a3c88c3a261995f9bb84e2201424e3a58659b9"><strong>debian/patches/test-local-pauvre.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,13 +12,12 @@ Last-Update: 2020-04-25</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-pauvre.orig/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-pauvre/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -51,7 +51,<span class="idiff left right">9</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -51,7 +51,<span class="idiff left right">8</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> """This verifies that the LibSeq class is constructed with all of the</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> parameters that are present in the meraculous config files"""</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> os.chdir(self.thisoutdir)</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- thiscommand = """pauvre synplot --aln_dir {0} \</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ thiscommand = """PYTHONPATH=../../../..\</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ python3 ../../../pauvre_main.py synplot \</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ thiscommand = """python3 ../../../pauvre_main.py synplot \</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ --aln_dir {0} \</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> --fileform pdf \</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> --gff_paths {1} {2} {3} \</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/78a72c0eb90c81cc4d9762b82e5d51621872e477#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,8 +20,8 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"><span class="idiff left right">### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"><span class="idiff left right">#override_dh_auto_test:</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"><span class="idiff left right">#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"><span class="idiff left right"># do_stuff_for_testing</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"><span class="idiff left right">#</span>endif</span></pre>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"><span class="idiff left right">override_dh_auto_test:</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"><span class="idiff left right">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"><span class="idiff left right"> export PYTHONPATH="$(CURDIR)" \</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"><span class="idiff left right"> && dh_auto_test</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">endif</span></pre>
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