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<h3>
Rebecca N. Palmer pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/ce27b1dacceaee021d69535a06d1051baeb76993">ce27b1da</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:41:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.14.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/484cdb238478091803d3c83cdaa0dacde1a065fe">484cdb23</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:41:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/8d134ae34633ab8751c77e491f37cafaca074470">8d134ae3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:41:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.14.0'
Update to upstream version '5.14.0'
with Debian dir 559c55c33e4d63d8cdd14b7208f344f4b1907ba0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/6692c23adec07c52d4cc4f4540923ec90e231557">6692c23a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:52:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/36701c13b2d5880f0794d35c915e7a9cc240a6b9">36701c13</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:53:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/5ede8016b28a90b6cd2e8d705484b0e6fa7a3b46">5ede8016</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:53:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/c1b4cc8cfbab21c5871f5bffdbb1ed081fa9f560">c1b4cc8c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:53:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f671d67b08614c65e4da995dc1d3cba2a7ee2ba4">f671d67b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-09T10:53:17+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/ddcda055132d11c2aa238342983065fcd0fd74fe">ddcda055</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T14:27:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Python 3 in subprocess calls.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/c828485311e9ad238e27c94d3a76e366b458564d">c8284853</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T14:58:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' into debian_for_upstream_5.14.0_which_requires_conda
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/56367974d7d277e4617e0d25d63ab3fe6ca25c51">56367974</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T17:15:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">move python3 fixes to a single patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e9fcd301371aee7d9ab1b80af62ad1889f941cc1">e9fcd301</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T17:18:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Disable buggy test (upstream 322) and tests needing conda or docker.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/925c7493de6f1de83645d2ec78c08d6e476ff1e8">925c7493</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T17:20:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Delete unused patches.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/1cf3a516468339a8a3489b681efa689a876cab46">1cf3a516</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T17:21:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use boto3 (like upstream) not boto.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e5b407fe8698550efa31df9ddcd510c3b249f1cb">e5b407fe</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T18:12:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Reproducibility: don't ship (timestamped) test logs.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/a767af98c0dc2e75ed4559e08d39d974ca9b6141">a767af98</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T18:14:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add self to Uploaders.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f156c10e5d0a4e3bdef12ac635f7a66cac50efad">f156c10e</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T22:13:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/copyright.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e5cc7980fc0ee227c5e7fcb907ec558de2474671">e5cc7980</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-09T22:15:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove Files-Excluded: the excluded directory no longer exists upstream.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/bf14fd40b6ec958cee45ac7a3f239ba91d4a24de">bf14fd40</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-10T13:05:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/copyright.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/1290158799bab1100d14a0f48f6cc4d915ab01c1">12901587</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-10T13:07:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable verbose test output.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/8fa5ce30bcd58ef663597421c2b8f26535051991">8fa5ce30</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-10T13:07:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update dependencies, add minimal-Depends test.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/2dc6d5bd5ca0326f77dc19005e7378db4895ff2d">2dc6d5bd</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-10T22:36:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/copyright.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e7d154fa5c24b5873740cbdafc72920f1660f3c9">e7d154fa</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-11T11:24:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Privacy: use local dagre-d3, add missing Javascript dependencies,
don't appear to show live status when we don't.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/148f00554b69f8cb921cf77fea094025597fa3a5">148f0055</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-24T16:42:38+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use https for links where available.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/fa3937381a74c9b3f7fbe708a329256ee4141ec2">fa393738</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-24T16:44:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix rather than disable broken test_cluster_sync
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/7d50f8d318478b6bb767b008c540da954f4fc92a">7d50f8d3</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-24T17:07:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">edit patch descriptions, include upstream status
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/ae057049ab68ec6742eb78605dfa9d823d335f65">ae057049</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-25T15:53:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix link_security.patch (needs both upstream commits,
and overlaps with local_javascript.patch)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/d5c191a18c323a7df976012e72014ead257ac2ad">d5c191a1</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-25T17:35:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove inconveniently licensed (CC-BY-SA) snippets.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/ff24eb24855ae1cf2e52bd66f4a0d41d66858d01">ff24eb24</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-25T19:01:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install examples.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#24139dae656713ba861751fb2c2ac38839349a7a">
.gitattributes
</a>
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<a href="#c778226b6c4c0fb51cf7942c8ee1f3d9fc1249d0">
.github/workflows/main.yml
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
</a>
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<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
debian/README.source
</a>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
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<li class="file-stats">
<a href="#0cd8999e60d37d01e0033f1ec12edfaa3bd76c23">
<span class="deleted-file">
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debian/patches/0003-Use-debian-s-mathjax-package.patch
</span>
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debian/patches/0004-drop_test_symlink_time_handling.patch
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debian/patches/0009-skip-test-without-google-cloud-sdk.patch
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debian/patches/local_javascript.patch
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debian/patches/python3
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debian/patches/python3.patch
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debian/patches/series
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debian/patches/workaround_sphinx_issue.patch
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debian/rules
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<h5>The diff was not included because it is too large.</h5>
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