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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pauvre">Debian Med / python-pauvre</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/31185cdc17a3ec0078b5adaff167b87eb59ff3a4">31185cdc</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-04-25T18:32:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">patch for build test failing to start
The test script assumes that the pauvre command is available in the
path of the tester, but at the build stage of the packaging, this
is not available yet.
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#25a3c88c3a261995f9bb84e2201424e3a58659b9">
<span class="new-file">
+
debian/patches/test-local-pauvre.patch
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</a>
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<h4>Changes:</h4>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/31185cdc17a3ec0078b5adaff167b87eb59ff3a4#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">2to3.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">typo-redwood.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">test-local-pauvre.patch</span></pre>
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<li id="25a3c88c3a261995f9bb84e2201424e3a58659b9">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/31185cdc17a3ec0078b5adaff167b87eb59ff3a4#25a3c88c3a261995f9bb84e2201424e3a58659b9"><strong>debian/patches/test-local-pauvre.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Use local "pauvre" for build testing</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> The current testing in place embeds a shell script which makes the assumption</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> that the command "pauvre" is available in the path of the tester. It would</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> seem better to either carry out this test later in the package construction</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> steps, or make sure that this is the working copy of pauvre_main.py which is</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> being tested. This patch applies the second approach, to allow going a step</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> further with build testing.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">Author: Étienne Mollier <etienne.mollier@mailoo.org></span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="p">Forwarded: no</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">Last-Update: 2020-04-25</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-pauvre.orig/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-pauvre/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -51,7 +51,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> """This verifies that the LibSeq class is constructed with all of the</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> parameters that are present in the meraculous config files"""</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> os.chdir(self.thisoutdir)</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- thiscommand = """pauvre synplot --aln_dir {0} \</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ thiscommand = """PYTHONPATH=../../../..\</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ python3 ../../../pauvre_main.py synplot \</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ --aln_dir {0} \</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> --fileform pdf \</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> --gff_paths {1} {2} {3} \</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> --center_on COX1 \</span></pre>
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