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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pauvre">Debian Med / python-pauvre</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/ec01bdf07d3f8630e65d0ae45aebdedb2ec9e453">ec01bdf0</a></strong>
<div>
<span>by Etienne Mollier</span>
<i>at 2020-04-26T10:48:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">moved away from patch to use a placeholder pauvre
the way the patch ended up didn't make it really suitable for
upstream upload, as not standalone without the appropriate changes
in debian/.
</pre>
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<h4>4 changed files:</h4>
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<a href="#50ac8fb21e258ca396c14c49147bf1c68e552340">
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+
debian/bin/pauvre
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#25a3c88c3a261995f9bb84e2201424e3a58659b9">
<span class="deleted-file">
−
debian/patches/test-local-pauvre.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="50ac8fb21e258ca396c14c49147bf1c68e552340">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/ec01bdf07d3f8630e65d0ae45aebdedb2ec9e453#50ac8fb21e258ca396c14c49147bf1c68e552340"><strong>debian/bin/pauvre</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#! /bin/bash</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># pauvre reimplementation in shell: the test suite expects its availability in</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># the PATH. Appropriate python environment is expected to be set in d/rules.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-ex</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="nb" style="color: #0086b3;">exec </span>python3 <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$CURDIR</span><span class="s2" style="color: #d14;">/pauvre/pauvre_main.py"</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$@</span><span class="s2" style="color: #d14;">"</span></span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/ec01bdf07d3f8630e65d0ae45aebdedb2ec9e453#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">2to3.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">typo-redwood.patch</span></pre>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">test-local-pauvre.patch</span></pre>
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<li id="25a3c88c3a261995f9bb84e2201424e3a58659b9">
<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/ec01bdf07d3f8630e65d0ae45aebdedb2ec9e453#25a3c88c3a261995f9bb84e2201424e3a58659b9"><strong>debian/patches/test-local-pauvre.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: Use local "pauvre" for build testing</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> The current testing in place embeds a shell script which makes the assumption</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"> that the command "pauvre" is available in the path of the tester. It would</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> seem better to either carry out this test later in the package construction</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"> steps, or make sure that this is the working copy of pauvre_main.py which is</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> being tested. This patch applies the second approach, to allow going a step</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> further with build testing.</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">Author: Étienne Mollier <etienne.mollier@mailoo.org></span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">Forwarded: no</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="p">Last-Update: 2020-04-25</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-pauvre.orig/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-pauvre/pauvre/tests/test_synplot.py</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -51,7 +51,8 @@</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> """This verifies that the LibSeq class is constructed with all of the</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> parameters that are present in the meraculous config files"""</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> os.chdir(self.thisoutdir)</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- thiscommand = """pauvre synplot --aln_dir {0} \</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ thiscommand = """python3 ../../../pauvre_main.py synplot \</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ --aln_dir {0} \</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> --fileform pdf \</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> --gff_paths {1} {2} {3} \</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> --center_on COX1 \</span></pre>
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<a href="https://salsa.debian.org/med-team/python-pauvre/-/commit/ec01bdf07d3f8630e65d0ae45aebdedb2ec9e453#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,8 @@ include /usr/share/dpkg/default.mk</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> export PYTHONPATH="$(CURDIR)" \</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> && dh_auto_test</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> CURDIR="$(CURDIR)" \</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> PATH="$(CURDIR)/debian/bin:$$PATH" \</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> PYTHONPATH="$(CURDIR)" \</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> dh_auto_test</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">endif</span></pre>
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