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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/2831268b90d9ea99c0ed222ded5b2e543086b78d">2831268b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-10-14T10:49:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.8.6+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/1412d7f77a6031d1e38a0b17bf81d95cbfc3b77d">1412d7f7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T16:55:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add build-dep on r-bioc-rots
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/8cbef3e05ad562483bb90b03ccf4822c9118dc40">8cbef3e0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:01:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/1c446ac50ffd90173fe690bda699cbaced379ed7">1c446ac5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:02:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.10.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/823be8fb11225a2ff1d23499ee16f04adf2e2def">823be8fb</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:05:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.10.0+dfsg'
Update to upstream version '2.10.0+dfsg'
with Debian dir b5013a0629527e43eef7003a3144fb2349436359</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f11e454c576df1964591891f1c0e4bd4721c3c54">f11e454c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:05:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/bf83f7ddc4cf9dc77d3a6763e55aa1c633676294">bf83f7dd</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:31:06+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/cdd32fbafcde4c0736f75b33ceac4557d7bb4812">cdd32fba</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:31:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/64eb0ca41bf8c34d3251d135ac8a5a41e959dbd6">64eb0ca4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:31:41+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/097cb276034a2b90fbad28de87d753340f00192a">097cb276</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T17:41:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/7b171d3b9f2d6024f20cb2208eab0e78cd31f43a">7b171d3b</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T18:20:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/rules: seqtk-trinity now has a unversioned path
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/44e5a36e7e6c445b706a2cc53b37f4b4538c5f4a">44e5a36e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T18:24:26+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/patches/butterfly: restore missing Butterfly sources
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/e9f7472873049f58a9843a632ed656d60cab0241">e9f74728</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T19:05:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">many more deps
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/a50c58bf422237faddb05c21c0353f9cfaf60f33">a50c58bf</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T23:23:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install the new bamsfilter plugin
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/-/commit/550d8458ef63ffaeb289c1e494e99962051a1ea9">550d8458</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-04-26T23:33:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fixup heatmap
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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Analysis/DifferentialExpression/Glimma.Trinity.Rscript
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Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
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Analysis/DifferentialExpression/run_DE_analysis.pl
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Analysis/DifferentialExpression/run_GOseq.pl
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Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
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