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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bedops">Debian Med / bedops</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bedops/-/commit/13ce897e1a2dc7b26e784df22950fe9b24708ced">13ce897e</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-04-27T15:58:12+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.39+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#21dcfe5fbfb2757e0fe4546b2f1f79ea5051688d">
applications/bed/bedextract/src/ExtractRows.cpp
</a>
</li>
<li class="file-stats">
<a href="#685dac4f0812655b4a58bc53675590ff26f6b59e">
applications/bed/bedmap/src/Bedmap.cpp
</a>
</li>
<li class="file-stats">
<a href="#a87d43a21ace249125fb90791f55ca5758ebdbd9">
applications/bed/bedmap/src/Input.hpp
</a>
</li>
<li class="file-stats">
<a href="#b2cf88308691089e335f662e36d6987787300f9d">
applications/bed/bedmap/src/TDefs.hpp
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<li class="file-stats">
<a href="#bf943230aa6af8d1aaa22de8521b6e97beda8cce">
applications/bed/bedops/src/BedPadReader.hpp
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</li>
<li class="file-stats">
<a href="#551cab7384734ed68d58d0a000f9f38c7cc82388">
applications/bed/bedops/src/Bedops.cpp
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</li>
<li class="file-stats">
<a href="#405b477b374cd27614766cf5f744ae20f33bbfea">
applications/bed/bedops/src/Input.hpp
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<li class="file-stats">
<a href="#c7e2ec9cc3edd9711fc0192045a4301a345b1fa4">
applications/bed/closestfeats/src/BedReader.hpp
</a>
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<li class="file-stats">
<a href="#7018858d65515eee6d6383012ce71a74096e8e09">
applications/bed/closestfeats/src/ClosestFeature.cpp
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<li class="file-stats">
<a href="#60073875f4307b95786e4751a9e37edc954e781b">
applications/bed/closestfeats/src/Input.hpp
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<li class="file-stats">
<a href="#f2237f720685494b8cc982369c9eed1c42e73c61">
applications/bed/closestfeats/src/Printers.hpp
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<li class="file-stats">
<a href="#c846a0073de7cc8dcdbac602fdc31b436e1d4975">
applications/bed/conversion/src/convert2bed.c
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<li class="file-stats">
<a href="#5658a671102c149d8496742e98033b881b013a05">
applications/bed/conversion/src/convert2bed.h
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<li class="file-stats">
<a href="#b7fc389580fd1770b7f57d3566c7da74e2b0e886">
applications/bed/conversion/src/tests/gtf/sample.expected.bed
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<li class="file-stats">
<a href="#1a3854d6c02362157dc3f299d97a5ad75436d530">
applications/bed/conversion/src/tests/gtf/sample.expected.gzip.starch
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<li class="file-stats">
<a href="#beb65b27c5f8f58c5d8f006e332658cc7beb0ed8">
applications/bed/conversion/src/tests/gtf/sample.expected.starch
</a>
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<li class="file-stats">
<a href="#7ec18d6618b41e523f41958a339ef78103c6e349">
applications/bed/sort-bed/src/CheckSort.cpp
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<li class="file-stats">
<a href="#4039c0239288850a150f82e3a23df8f16a9c8631">
applications/bed/sort-bed/src/Sort.cpp
</a>
</li>
<li class="file-stats">
<a href="#e8642eb192a0c5b1f60c69f3c6be28fb776d8c3c">
applications/bed/sort-bed/src/SortDetails.cpp
</a>
</li>
<li class="file-stats">
<a href="#6b0cad9e7fc80f34c53fac130a88828417fafc65">
applications/bed/sort-bed/src/Structures.hpp
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</li>
<li class="file-stats">
<a href="#5d557c3ca00521c284241a5b0e91b1dee543cbd2">
applications/bed/sort-bed/src/update-sort-bed-migrate-candidates.py
</a>
</li>
<li class="file-stats">
<a href="#6c66ab1117013b75fde5380ff2b49c332d392191">
applications/bed/sort-bed/src/update-sort-bed-slurm.py
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</li>
<li class="file-stats">
<a href="#3293b9e029cf4f59cb465113e840043efbb15077">
applications/bed/sort-bed/src/update-sort-bed-starch-slurm.py
</a>
</li>
<li class="file-stats">
<a href="#efbe0b03c92965877c6b1c90abc3141f01555972">
applications/bed/starch/src/Makefile.darwin
</a>
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<li class="file-stats">
<a href="#2a7928495f486ce3bac5296c79c914865d08da35">
applications/bed/starch/src/starch-diff.py
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</li>
<li class="file-stats">
<a href="#c5350dee180dac0a43c47901158b26c5af6c242b">
applications/bed/starch/src/starch.c
</a>
</li>
<li class="file-stats">
<a href="#d79573be0f80099a80726a61e87e28380bae2144">
applications/bed/starch/src/starch.h
</a>
</li>
<li class="file-stats">
<a href="#66c787e748a3edbc509836924c530a477c3bb458">
applications/bed/starch/src/starchcat.c
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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