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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/nanoplot">Debian Med / nanoplot</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707">72cdf034</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-04-27T10:00:36+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup installation a bit
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<h4>6 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
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+
debian/examples
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+
debian/install
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#cc8afbe285897930ff4f641a9743c099b132eb36">
debian/tests/control
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debian/tests/control_not_umplemented_yet
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">nanoplot (1.29.0-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> TODO: https://salsa.debian.org/med-team/python-pauvre</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> https://github.com/wdecoster/nanoget (version lagging behind -> check https://pypi.org/project/nanoget/</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> https://github.com/wdecoster/nanomath (lacks version -> check https://pypi.org/project/nanomath/</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 22 Apr 2020 16:40:23 +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,8 +32,8 @@ Depends: ${python3:Depends},</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> python3-statsmodels,</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> python3-pauvre,</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> python3-plotly,</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"><span class="idiff left right"># python3-nanoget (>=1.9.0)</span>,</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"><span class="idiff left right"># python3-nanomath (>=0.23.1)</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"><span class="idiff left right"> python3-nanoget</span>,</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"><span class="idiff left right"> python3-nanomath</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">Description: plotting scripts for long read sequencing data</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> NanoPlot provides plotting scripts for long read sequencing data.</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> .</span>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">scripts/test.sh</span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707#68d8c5c6babbf5cf109b2584c454449dbff75772"><strong>debian/install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">scripts/[a-s]* usr/share/nanoplot</span></pre>
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<a href="https://salsa.debian.org/med-team/nanoplot/-/commit/72cdf034caab4d8406d98fb359e8c56f89d95707#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">export LC_ALL=C.UTF-8</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"># this provides:</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"># DEB_SOURCE: the source package name</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"># DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM: the package's upstream version</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"># DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"># SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"># specified by <https://reproducible-builds.org/specs/source-date-epoch/></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"># for hardening you might like to uncomment this:</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> # Scripts will be installed into different location</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> find debian -name scripts -type d | xargs rm -rf</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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23
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">#override_dh_auto_test:</span>
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25
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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