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<h3>
Rebecca N. Palmer pushed to branch master
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/604fd9266fabeb05425c4a707cce07f746e4ba50">604fd926</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-27T12:11:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Stop using pytest-xdist: it sometimes starts tests from a non-main thread, which breaks snakemake.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/2edfcb5f82bd7bb1cd34ace89c3e8ca23b52a2a0">2edfcb5f</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-27T12:17:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.15.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/e384c90ac1a18966c34632e5b27aa87e5445c62f">e384c90a</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-27T12:18:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.15.0'
Update to upstream version '5.15.0'
with Debian dir 422f6d6ab1f85b4dfdf1676ff783222e756c8f3f</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/9d7dbfdce6dd096318269f7ebee194c9a4193d20">9d7dbfdc</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-27T15:34:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop patches applied upstream, refresh patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/-/commit/9667f24ac33e6204cd6801693ca496db43c21384">9667f24a</a></strong>
<div>
<span>by Rebecca N. Palmer</span>
<i>at 2020-04-27T15:59:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add missing test-dependency
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#31abb991f60e62441a34137fbf2a74ea3c4d1ea7">
<span class="deleted-file">
−
debian/patches/bug322_cluster_sync.patch
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<li class="file-stats">
<a href="#7af1b47e7c28e029594f4457cc27d4671dc7fd42">
<span class="deleted-file">
−
debian/patches/link_security.patch
</span>
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<li class="file-stats">
<a href="#e246f69e945a7c2e9a8e25cfacfcac7714c92b69">
debian/patches/python3.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#3f4c1daa84110ac0a1cf43167520d6d8737bc806">
docs/Makefile
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<li class="file-stats">
<a href="#f1dc0d1ef6d18ec89b045bf0e12d929f3dcbf3e2">
docs/executing/cluster-cloud.rst
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<li class="file-stats">
<a href="#d7b11acbae502ce46216c56c2dcb190943a3c1f9">
docs/executing/interoperability.rst
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<li class="file-stats">
<a href="#d0153cac95479af9bfb99b746b633bc8255bb53a">
docs/index.rst
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<li class="file-stats">
<a href="#ad625b9e60afaa48fccb62f2b331b7fbb133ee22">
docs/project_info/citations.rst
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<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
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<li class="file-stats">
<a href="#970437b3b02619352a63fbf1fff809371104c05f">
docs/project_info/more_resources.rst
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<li class="file-stats">
<a href="#9b54be2cff8d0de677b1245d0b0dc07cca021923">
docs/snakefiles/configuration.rst
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<li class="file-stats">
<a href="#945ec74fc1c17902d98bca84b7a1f0dfd755c01b">
docs/snakefiles/deployment.rst
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<li class="file-stats">
<a href="#02739d845044a6cd860043a088ae0a786829cd56">
docs/snakefiles/modularization.rst
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<li class="file-stats">
<a href="#678d7e50121966ef613372bf85b3e7f144e00ef1">
docs/snakefiles/remote_files.rst
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<li class="file-stats">
<a href="#f2ad3e3ae7fe1cf3ff9f5d75e080faf74d1d8980">
docs/snakefiles/reporting.rst
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<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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<li class="file-stats">
<a href="#6e44c81569e59fa3a94e1cf4a660f38c9fe5ca24">
docs/tutorial/additional_features.rst
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<li class="file-stats">
<a href="#a64f4e86841a3aed0cd5f5ec9d71431086ea0014">
docs/tutorial/advanced.rst
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<li class="file-stats">
<a href="#7f695df9a93bb6d2f47c562fd1282181e830528b">
docs/tutorial/basics.rst
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<li class="file-stats">
<a href="#93270ff2eb7f389db8b4ad6035cb96e4e1622227">
docs/tutorial/setup.rst
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<li class="file-stats">
<a href="#cf170f1aad8eab1ea8f50709422e4eae4ebaf604">
docs/tutorial/short.rst
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<li class="file-stats">
<a href="#6f0e88557663f7c802611536b868d357ec428260">
docs/tutorial/tutorial.rst
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</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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