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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/831d36b34f8412ef68b60028d818476db99b8ac2">831d36b3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-29T01:45:33+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/831d36b34f8412ef68b60028d818476db99b8ac2#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Tue, 28 Apr 2020 01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: <span class="idiff left right">Wed, 29 Apr 2020 01:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 173 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">8 | {laboratory,practice,imaging,covid-19,his,oncolog</span>y} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">0</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | <span class="idiff left right">29</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 29 | {<span class="idiff left right">imaging,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3</span> | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">7 | {covid-19,imaging,practice,his,oncology,laborator</span>y} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix | <span class="idiff left right">30</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 29 | {<span class="idiff left right">covid-19,imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> openslide | 19 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> gnumed-server | 18 | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gnumed-server | 18 | {practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> minc-tools | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> pixelmed | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> king | 17 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> minc-tools | 17 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> king | 17 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> hunspell-en-med | 16 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> invesalius | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> adun.app | 14 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> biosig4c++ | 14 | {<span class="idiff left right">imaging,physics</span>} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> biosig4c++ | 14 | {<span class="idiff left right">physics,imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> mia | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gasic | 11 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> obitools | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> mipe | 9 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ncbi-entrez-direct | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> parsnp | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">-phylogeny,cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> ampliconnoise | 8 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> tree-puzzle | 9 | {bio<span class="idiff left right">,cloud,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> ampliconnoise | 8 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> fitgcp | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> insighttoolkit4 | 8 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> fitgcp | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> cgview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> embassy-domainatrix | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> jaligner | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> paml | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> alter-sequence-alignment | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> anfo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> arden | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> arden | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> cluster3 | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> codonw | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> dazzdb | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> diamond-aligner | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> embassy-domsearch | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> freebayes | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> freecontact | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> freecontact | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> mrs | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> neobio | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> neobio | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> norsp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> prime-phylo | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> prime-phylo | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> salmon | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> seer | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> sibsim4 | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> sigma-align | 6 | {bio,<span class="idiff left right">cloud,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> sigma-align | 6 | {bio,<span class="idiff left right">bio-phylogeny,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> squizz | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> squizz | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> beads | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> bio-rainbow | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> bio-tradis | 5 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> bio-tradis | 5 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> centrifuge | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> daligner | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> delly | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> delly | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> diamond-aligner | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> freebayes | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> mapsembler2 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> mhap | 5 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> mhap | 5 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> paraclu | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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102
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> phybin | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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104
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> placnet | 5 | {bio} | </span>
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> probabel | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> probabel | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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107
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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108
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> psychopy | 5 | {psychology} | </span>
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,15 +114,15 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> sickle | 5 | {bio} | </span>
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115
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> transrate-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> treeview | 5 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> abacas | 4 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> treeview | 5 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> abacas | 4 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> clonalframeml | 4 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> clonalframeml | 4 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> dindel | 4 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -145,7 +144,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> perm | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> proalign | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> prottest | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> prottest | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> relion | 4 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -178,11 +177,11 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> quorum | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> rtax | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> rtax | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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186
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -192,10 +191,10 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> vsearch | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> ctn | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> libvistaio | 2 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,14 +207,14 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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210
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> stringtie | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> stringtie | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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212
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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213
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> varscan | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> varscan | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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215
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> velvetoptimiser | 2 | {bio} | </span>
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216
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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217
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> biobambam2 | 1 | {bio<span class="idiff left right">,covid-19,bio-dev</span>} | </span>
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218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="plaintext"> blasr | 1 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> biobambam2 | 1 | {bio<span class="idiff left right">-dev,bio,covid-19</span>} | </span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> blasr | 1 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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219
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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220
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -226,7 +225,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> orthanc-postgresql | 1 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">tools,data</span>,practice} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">data,tools</span>,practice} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -240,7 +239,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> spaln | 1 | {covid-19,bio} | </span>
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">cloud,bio-phylogeny</span>,bio} | </span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> tree-puzzle | 1 | {<span class="idiff left right">bio-phylogeny,cloud</span>,bio} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> augur | 0 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -254,7 +253,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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253
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> libbio-mage-utils-perl | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -272,7 +271,7 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="plaintext"> libics | 0 | {covid-19,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> libmaus2 | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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277
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -283,19 +282,18 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> libstatgen | 0 | {bio-dev} | </span>
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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284
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="plaintext"> metastudent-data-2 | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> mia | 0 | {imaging-dev} | </span>
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> milib | 0 | {bio-dev,covid-19} | </span>
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287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> multiqc | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="plaintext"> murasaki | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -307,5 +305,5 @@ Last-Update: Tue, 28 Apr 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="plaintext"> bustools | -1 | {bio} | </span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="plaintext">(33<span class="idiff left right">4</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext">(33<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="plaintext"></span></pre>
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