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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d63557df431dec2a69f59633fd603f25cb338b8c">d63557df</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-04-29T13:45:15+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d63557df431dec2a69f59633fd603f25cb338b8c#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 29 Apr 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 29 Apr 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">3 | {covid-19,practice,imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">7 | {covid-19,imaging,practice,his,oncology</span>,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">7</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">4 | {imaging,practice,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 3<span class="idiff left right">8 | {his,covid-19,practice,oncology,imaging</span>,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicomscope | 3<span class="idiff left right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 32 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 30 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 29 | {covid-19,imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,46 +15,47 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 18 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> minc-tools | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> pixelmed | 18 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> invesalius | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> king | 17 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> hunspell-en-med | 16 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 16 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 16 | {bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> adun.app | 14 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> biosig4c++ | 14 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">gasic | 11 | {bio,cloud}</span> | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right">obitools | 11 | {bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">0</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">obitools | 12 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> <span class="idiff left right">gasic | 11 | {cloud,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> gdcm | 1<span class="idiff left right">1</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> mipe | 9 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ncbi-entrez-direct | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> parsnp | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> tree-puzzle | 9 | {bio,cloud,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> ampliconnoise | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> tree-puzzle | 9 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> ampliconnoise | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> fitgcp | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> fitgcp | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> cgview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> embassy-domainatrix | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> jaligner | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> paml | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> alter-sequence-alignment | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> bio-tradis | 6 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> cluster3 | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> codonw | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> dazzdb | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> embassy-domsearch | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> freecontact | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,43 +70,41 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> prime-phylo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> salmon | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> seer | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> sibsim4 | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">bio,bio-phylogeny,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> spread-phy | 6 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> sibsim4 | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">cloud,bio,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> spread-phy | 6 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> squizz | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> beads | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> biomaj3-daemon | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> bio-rainbow | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> centrifuge | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> daligner | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> delly | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> diamond-aligner | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> daligner | 5 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> delly | 5 | {covid-19,bio} | </span>
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> freebayes | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> mapsembler2 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> mhap | 5 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> mhap | 5 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> paraclu | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> paraclu | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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101
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> phybin | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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103
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> placnet | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> probabel | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> psychopy | 5 | {psychology} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> radiant | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> rdp-readseq | 5 | {bio} | </span>
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> repeatmasker-recon | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,7 +119,7 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> beast-mcmc | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> clonalframeml | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> dascrubber | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -141,9 +140,9 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> murasaki | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> orthanc-webviewer | 4 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> perm | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> perm | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> proalign | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> proalign | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> prottest | 4 | {bio-phylogeny,bio} | </span>
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> rdp-classifier | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -152,9 +151,10 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> scythe | 4 | {bio} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> segemehl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> sga | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> soapaligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> tnseq-transit | 4 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> tnseq-transit | 4 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> bart-view | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -168,9 +168,10 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> libgff | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> mlv-smile | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> mlv-smile | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> orthanc-dicomweb | 3 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> orthanc-mysql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -181,29 +182,28 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> runcircos-gui | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> velvetoptimiser | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> vsearch | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="plaintext"> beast2-mcmc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> ctn | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> cufflinks | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> elastix | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> libvistaio | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> phipack | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> python-scitrack | 2 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -211,13 +211,13 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> varscan | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> velvetoptimiser | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> atropos | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> biobambam2 | 1 | {bio-dev,<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> biobambam2 | 1 | {bio-dev,<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> blasr | 1 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -230,19 +230,18 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> python-py2bit | 1 | {bio-dev,bio} | </span>
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> python-py2bit | 1 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext"> spaln | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> spaln | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> tree-puzzle | 1 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -253,10 +252,9 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;"> <span id="LC253" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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257
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<pre style="margin: 0;"> <span id="LC257" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> libbio-mage-utils-perl | 0 | {bio-dev} | </span>
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258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> libbioparser-dev | 0 | {bio-dev} | </span>
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261
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259
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="plaintext"> libbpp-core | 0 | {bio-dev} | </span>
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262
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="plaintext"> libbpp-phyl | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -292,8 +290,8 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -305,5 +303,5 @@ Last-Update: Wed, 29 Apr 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> bustools | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="plaintext">(33<span class="idiff left right">2</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext">(33<span class="idiff left right">0</span> rows)</span>
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