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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/defd9929e2323cb88024ce28a5ff04508760be6f">defd9929</a></strong>
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<span>by Dylan Aïssi</span>
<i>at 2020-04-30T08:42:40+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 38.82+dfsg</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
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<li class="file-stats">
<a href="#e463fa97b3ad8760b49cf0b08654d96aa72d6e84">
applyvariants.sh
</a>
</li>
<li class="file-stats">
<a href="#67d907d61087ac2bc1410f5791ecd5d94426cc74">
bbduk.sh
</a>
</li>
<li class="file-stats">
<a href="#61cf421f1524d6f40443ea18a67da6045ca09a79">
callvariants.sh
</a>
</li>
<li class="file-stats">
<a href="#46af8af8ebf9b9ecfcce9243b76ed0583cf7155f">
current/bloom/BloomFilterCorrectorWrapper.java
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<li class="file-stats">
<a href="#d80b57d4b97042387304cb5947d9688808b2a41a">
<span class="new-file">
+
current/cardinality/BBLog.java
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<li class="file-stats">
<a href="#8244dbd6d7021649da5d3c7454b679b2ba8201c3">
<span class="new-file">
+
current/cardinality/BBLog_simple.java
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<li class="file-stats">
<a href="#d89ce85c8239a13f62bc6749a5518b9eb09e762f">
<span class="new-file">
+
current/cardinality/CardinalityTracker.java
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<li class="file-stats">
<a href="#7dab3e0c263c47e5583ac5acc395614d713ed353">
<span class="new-file">
+
current/cardinality/LogLog.java
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<li class="file-stats">
<a href="#fb9948d006ed6c2d6daac15a72c4abe856d9477c">
<span class="new-file">
+
current/cardinality/LogLog16.java
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<li class="file-stats">
<a href="#32cd003d4119a4b836ca62671141b69326cc65de">
<span class="new-file">
+
current/cardinality/LogLog2.java
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<li class="file-stats">
<a href="#fca440c9a316f820a7f80bbb24628717bd45dc8b">
<span class="new-file">
+
current/cardinality/LogLog8.java
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<li class="file-stats">
<a href="#f64324ff36cab0959a2df2c59aecdc814c713a51">
<span class="new-file">
+
current/cardinality/LogLog8_simple.java
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<li class="file-stats">
<a href="#dc3d3092a207edf1afb07d3e4f149c4561fc29bc">
<span class="new-file">
+
current/cardinality/LogLogWrapper.java
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<li class="file-stats">
<a href="#6bd1b3499670b319c02db770fef733233be80a79">
current/jgi/LogLog.java
→
current/cardinality/LogLog_old.java
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<li class="file-stats">
<a href="#769cecdc17652aed4efa74297cf70c5cb50bee92">
current/jgi/MultiLogLog.java
→
current/cardinality/MultiLogLog.java
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<li class="file-stats">
<a href="#8231f81aa899337b58c60d2eb06975e2b1d611af">
<span class="new-file">
+
current/covid/SummarizeCoverage.java
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</a>
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<li class="file-stats">
<a href="#bfe78af039f579b7f27181ea50f9bc67749a458b">
current/dna/Data.java
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<li class="file-stats">
<a href="#e1216dd7fc77b0f5958a7dfb9e85f3ec3e2cb4ff">
<span class="new-file">
+
current/driver/Life.java
</span>
</a>
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<li class="file-stats">
<a href="#9ac9035ce39b161b7858554a32dbf3f92fdf88f4">
current/jgi/AddAdapters.java
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<li class="file-stats">
<a href="#06a7eaaf098b8d2e7c18a48b5d98671b027f6af9">
current/jgi/BBDuk.java
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<li class="file-stats">
<a href="#8e80fc83372d80183d64fca45f7913aa3f58f416">
current/jgi/BBDuk2.java
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<li class="file-stats">
<a href="#50a906cdcb096e16dea22cadd5e7eb2050e18375">
current/jgi/BBMerge.java
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<li class="file-stats">
<a href="#7f947ce880cf6e10339e0c0938ba201f1d44281e">
current/jgi/CoveragePileup.java
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<li class="file-stats">
<a href="#2874c0febfec3c0a1637b1b8a887463f0ae233ba">
current/jgi/DedupeByMapping.java
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<li class="file-stats">
<a href="#3a6bda08c4141c90ec16f9328834e616bfd82900">
current/jgi/FilterReadsWithSubs.java
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</li>
<li class="file-stats">
<a href="#9172dda078734ec20e5f60ce58ccf5ae6b56dcff">
current/jgi/FuseSequence.java
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<li class="file-stats">
<a href="#1abd232242388dcd0f7271ddcae8bb9eaa390273">
current/jgi/KmerCountMulti.java
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</li>
<li class="file-stats">
<a href="#635fa9bb7034f5bd7a766f17d0d6cc9b0800f06f">
current/jgi/RQCFilter2.java
</a>
</li>
<li class="file-stats">
<a href="#354de440070f308f32369208d622b97f46e1ac03">
current/jgi/ReformatReads.java
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<h5>The diff was not included because it is too large.</h5>
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