<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/spades">Debian Med / spades</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/b5ad813f6002e3808193a9c5fbe8ebb76ba77f0c">b5ad813f</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-05-03T20:31:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/a1d38af11b125cb87502bfbeb6b5df9d057f6a27">a1d38af1</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-05-03T20:31:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.14.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/cb10850a9211323c73dbc58896d395cbbc554c71">cb10850a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-05-03T20:31:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.14.1+dfsg'
Update to upstream version '3.14.1+dfsg'
with Debian dir 6a4eb29a16306de4fd17c1f1e211a24a393dc1fe</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spades/-/commit/b5f1a7e7d90da3c131da47bdbaaa48c3283d1c8b">b5f1a7e7</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-05-03T21:25:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjusting patches
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#7a8fa6f6b7e40bebb1d275838c6cdeadc10459d8">
assembler/LICENSE
</a>
</li>
<li class="file-stats">
<a href="#ae55101b54ce2616006582a65f21f81a27f56ef0">
assembler/VERSION
</a>
</li>
<li class="file-stats">
<a href="#a9849095d161d6172a4b8c397180ac07a1c37ec4">
assembler/changelog.html
</a>
</li>
<li class="file-stats">
<a href="#fe7fdbbf8b2079ee15a0add300260abc27048a3e">
assembler/manual.html
</a>
</li>
<li class="file-stats">
<a href="#c5aad8c7671d7db90fa83dd8e1b620715eb7353c">
assembler/rnaspades_manual.html
</a>
</li>
<li class="file-stats">
<a href="#344b2fb1cad0dee33bd7c516959e0ec2227bd1bd">
assembler/spades.py
</a>
</li>
<li class="file-stats">
<a href="#dcd694f38b9d988eef66a5f4f147c3bf07985834">
assembler/src/cmake/pack.cmake
</a>
</li>
<li class="file-stats">
<a href="#e31599754f5e9e71ed607656199b0a52e74319c7">
assembler/src/common/io/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#041344d3ac37cc4a48b739cd87d447572f588265">
<span class="new-file">
+
assembler/src/common/io/binary/genomic_info.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#fbbd77b0664ff15d26c117b4951ade85c53f4369">
assembler/src/common/io/graph/gfa_writer.hpp
</a>
</li>
<li class="file-stats">
<a href="#243d4886d48b6e545b0fb28bacee7d5b1e754621">
assembler/src/common/modules/chromosome_remover.cpp
</a>
</li>
<li class="file-stats">
<a href="#b7c3e136d08ee78843830d95aa345da684cf31ba">
assembler/src/common/modules/mismatch_shall_not_pass.hpp
</a>
</li>
<li class="file-stats">
<a href="#22b19d53d84021f795372a607f5378c5cb237c19">
assembler/src/common/pipeline/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#77dde7ebdb55ad72e16835cc1fd919f3ef6e67f1">
assembler/src/common/pipeline/config_struct.cpp
</a>
</li>
<li class="file-stats">
<a href="#88122420b12a54cc8baef94099aac7b779ed70a3">
assembler/src/common/pipeline/genomic_info.hpp
</a>
</li>
<li class="file-stats">
<a href="#c45d7b680d4e410376e95763d9b726ad95a011dd">
assembler/src/common/stages/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#b21478eecd6aae92a6d3874bb48602be66e7fd2d">
assembler/src/common/pipeline/genomic_info_filler.cpp
→
assembler/src/common/stages/genomic_info_filler.cpp
</a>
</li>
<li class="file-stats">
<a href="#5745e95b1b6f898d30d9e6f08cff112402e6ce08">
assembler/src/common/pipeline/genomic_info_filler.hpp
→
assembler/src/common/stages/genomic_info_filler.hpp
</a>
</li>
<li class="file-stats">
<a href="#95eaf7e689c88e800bc8c675a9ab064d1e0f0f4a">
assembler/src/common/utils/logger/logger.hpp
</a>
</li>
<li class="file-stats">
<a href="#1f4fb297ef420793064425a7fe67559e2dae3117">
assembler/src/projects/corrector/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#0ba498ca7f92b055bd760b804367e06905a4afcf">
assembler/src/projects/kmercount/read_filter.cpp
</a>
</li>
<li class="file-stats">
<a href="#9a7284b641fd7006d510d6b2d3051b0ef1061c67">
assembler/src/projects/spades/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#f62d3fc9e2b1b443c5e8c8b35bcdd58889b9f02b">
assembler/src/projects/spades/contig_output_stage.cpp
</a>
</li>
<li class="file-stats">
<a href="#be97a851bcff2e42e3aea68b09ee9b9e6d8869dc">
assembler/src/projects/spades/contig_output_stage.hpp
</a>
</li>
<li class="file-stats">
<a href="#eb8bafb0c0929cb8d3b6d5fb9a50f602af836389">
assembler/src/projects/spades/domain_graph.hpp
</a>
</li>
<li class="file-stats">
<a href="#93405f601b7a6dbd02271692a5c957e7b8ac95aa">
assembler/src/projects/spades/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#42efe9e9fd4361279fe731f0b940f2a5d7fcd16e">
assembler/src/projects/spades/launch.hpp
→
assembler/src/projects/spades/pipeline.cpp
</a>
</li>
<li class="file-stats">
<a href="#e318a3624efb54beadcbbc278ed9ef92ed6d0aaf">
assembler/src/projects/spades/second_phase_setup.cpp
</a>
</li>
<li class="file-stats">
<a href="#6a4e3a52bc21627a0c50db87a23b2238050539f0">
assembler/src/spades_pipeline/common/SeqIO.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/spades/-/compare/b7b8a5cefcaefe8543a6f7805d864d660f8a2157...b5f1a7e7d90da3c131da47bdbaaa48c3283d1c8b">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>