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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c93e0c2d0fab148579a04b24183954785f24d6fe">c93e0c2d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-04T13:45:02+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c93e0c2d0fab148579a04b24183954785f24d6fe#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 04 May 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 04 May 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">3</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">1</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">1</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 41 | {practice,covid-19,laboratory,imaging,oncology,his} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicomscope | 33 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> htsjdk | 33 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 34 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicom3tools | 32 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> gdcm | 26 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 32 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> gdcm | 25 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> openslide | 19 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> pixelmed | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gnumed-server | 17 | {practice,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> invesalius | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> king | 17 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> minc-tools | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> plastimatch | 17 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">adun.app | 14 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">plastimatch | 16 | {imaging}</span> | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> biosig4c++ | 14 | {physics,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> hunspell-en-med | 13 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> vtk-dicom | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> jebl2 | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> gasic | 10 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> obitools | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> gasic | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ncbi-entrez-direct | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> parsnp | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> tree-puzzle | 9 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> mipe | 8 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> tree-puzzle | 8 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> alter-sequence-alignment | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ampliconnoise | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> cgview | 7 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,8 +50,6 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> jaligner | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> king-probe | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> neobio | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> norsp | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,6 +64,7 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> sigma-align | 6 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> squizz | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> zalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -80,13 +79,15 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> freecontact | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> mapsembler2 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> mhap | 5 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> microbegps | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> orthanc-mysql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> paml | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> paraclu | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> phybin | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -100,7 +101,6 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> scythe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> sickle | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> stacks | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> transrate-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> treeview | 5 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,8 +125,8 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> libsmithwaterman | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> mencal | 4 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> nutsqlite | 4 | {tools} | </span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> paml | 4 | {bio} | </span>
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130
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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131
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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132
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,13 +162,11 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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162
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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163
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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164
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libgff | 3 | {bio-dev} | </span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> libsbml | 3 | {bio-dev} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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167
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> metaphlan2 | 3 | {bio} | </span>
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> mlv-smile | 3 | {bio,cloud} | </span>
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169
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> murasaki | 3 | {bio} | </span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> openslide | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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173
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> pilon | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -184,6 +182,7 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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184
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> snap-aligner | 3 | {bio} | </span>
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185
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> srf | 3 | {bio-dev} | </span>
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187
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -199,15 +198,14 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> libvistaio | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> ngs-sdk | 2 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> phipack | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> python-scitrack | 2 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> rampler | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> samblaster | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> stringtie | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -224,8 +222,10 @@ Last-Update: Mon, 04 May 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> openslide | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> oscar | 1 | {data,tools,practice} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> pal2nal | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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