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GitLab

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<h3>

Michael R. Crusoe pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>

</h3>

<h4>

Commits:

</h4>

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<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/cb23badacb308e05ce30cd483c99a9835b75a4e5">cb23bada</a></strong>

<div>

<span>by Michael R. Crusoe</span>

<i>at 2020-05-07T15:00:23+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 4.1.0</pre>

</li>

</ul>

<h4>30 changed files:</h4>

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<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">

.gitlab-ci.yml

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<li class="file-stats">

<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">

Makefile

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<li class="file-stats">

<a href="#561b88e19de321ca62c7590bbb350765fb110905">

README.rst

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<li class="file-stats">

<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">

docker/Dockerfile.py

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<li class="file-stats">

<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">

docs/appendices/environment_vars.rst

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<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">

docs/running/cliOptions.rst

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<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">

setup.py

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<li class="file-stats">

<a href="#42e82db8dfc40fc9f2df468cc92584cb0441719f">

src/toil/__init__.py

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<li class="file-stats">

<a href="#12a0e441211656f4b4856e8c4e6257e858fa6d17">

src/toil/batchSystems/__init__.py

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<a href="#59062b9d0a92eb7800de569b9a6c8818efe8a415">

src/toil/batchSystems/abstractBatchSystem.py

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<a href="#e80ba9107fbe8c247c4a06d919de60d903b13b57">

src/toil/batchSystems/abstractGridEngineBatchSystem.py

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<a href="#8665892a623b484a6317e6aef58200c3f489951b">

src/toil/batchSystems/gridengine.py

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<a href="#9859689e8bd3ddc443a4adadad9053893501bd72">

src/toil/batchSystems/kubernetes.py

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<a href="#184892bb0e21972b1bc724ffc0b62a4c3616a44c">

src/toil/batchSystems/lsf.py

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<a href="#51c103b23323037f067bfea96a5cd293cbd8bfab">

src/toil/batchSystems/mesos/batchSystem.py

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<a href="#99c24d1b30534d665746feee900c46f6e8459b39">

src/toil/batchSystems/options.py

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<a href="#40d7e534600c41f2ac23866cd2edfb31bccd3afe">

src/toil/batchSystems/singleMachine.py

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<a href="#a6f3af15c881ae20fc1a43acbbeb46501aac42d1">

src/toil/batchSystems/slurm.py

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<a href="#613fd687d50c98ed88dd86e84d2d6b01865013f3">

src/toil/batchSystems/torque.py

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<a href="#e4fd847d42e121b772337a96bada018b0e6ad45c">

src/toil/common.py

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<li class="file-stats">

<a href="#0dbd18a5ef7b094b4ad2f95d5aa87ee2ed51212f">

src/toil/cwl/cwltoil.py

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<li class="file-stats">

<a href="#a13607e119e7ea420a0824a7cdbd58157a4965f0">

src/toil/jobStores/aws/jobStore.py

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<a href="#f8698b8c91b4525c2e8a2cc4fe1f8b489291216f">

src/toil/jobStores/fileJobStore.py

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<li class="file-stats">

<a href="#ea5270bc3abd520281f872efd33d52f850400455">

src/toil/jobStores/utils.py

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<li class="file-stats">

<a href="#b423c2afb0f414beab2120da703bd01ca2a7bb55">

src/toil/leader.py

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<li class="file-stats">

<a href="#f79f42b6f106c28017c38d5755a5a6b851c8cae2">

src/toil/lib/misc.py

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<li class="file-stats">

<a href="#7e71432f91b03a2d090d368d005146e20d34f040">

src/toil/lib/threading.py

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<li class="file-stats">

<a href="#67b0e9a4c7ac917353df601be79a4d9c712d09f3">

src/toil/resource.py

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<li class="file-stats">

<a href="#6e8ee3e619de891a48dbafa4f9851650bf598f6a">

src/toil/test/cwl/cwlTest.py

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<li class="file-stats">

<a href="#6e1aeedb0bd3ae49e931eddb6ff314affe0eb5e4">

<span class="new-file">

+

src/toil/test/docs/scripts/example_cachingbenchmark.py

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<h5>The diff was not included because it is too large.</h5>

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