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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/35ba6083deb9542e1415666fef786b4a2c2f6994">35ba6083</a></strong>
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<span>by Steffen Möller</span>
<i>at 2020-05-11T16:29:44+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update control - adding list of binaries to descripition
Was looking for longer than I felt like looking for fastq-dump. To find this among the sra-tools was kind of unexpected, so I thought the description might do well mentioning it.</pre>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/35ba6083deb9542e1415666fef786b4a2c2f6994#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,6 +33,31 @@ Description: utilities for the NCBI Sequence Read Archive</td>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> THE OUTPUT FORMAT SEEN IN THIS RELEASE.</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> Other tools distributed in this package are:</span>
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> abi-dump, abi-load</span>
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<td class="diff-line-num new new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> align-info</span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> bam-load</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> cache-mgr</span>
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<td class="diff-line-num new new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> cg-load</span>
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<td class="diff-line-num new new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> copycat</span>
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<td class="diff-line-num new new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> fasterq-dump</span>
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<td class="diff-line-num new new_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> fastq-dump, fastq-load</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> helicos-load</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> illumina-dump, illumina-load</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> kar</span>
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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> kdbmeta</span>
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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> latf-load</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> pacbio-load</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> prefetch</span>
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<td class="diff-line-num new new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> rcexplain</span>
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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> remote-fuser</span>
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<td class="diff-line-num new old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> sff-dump, sff-load</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> sra-pileup, sra-sort, sra-stat, srapath</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> srf-load</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> test-sra</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock,</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> vdb-passwd, vdb-unlock, vdb-validate</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> .</span>
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36
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> The "help" information will be improved in near future releases, and</span>
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37
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> the tool options will become standardized across the set. More documentation</span>
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38
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> will also be provided documentation on the NCBI web site.</span>
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