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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/51eba0ce3791f54fdec24e7fc665c24482854299">51eba0ce</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T13:45:25+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/51eba0ce3791f54fdec24e7fc665c24482854299#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 13 May 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 13 May 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 185 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 53 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {practice,covid-19,imaging,his,oncology,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 34 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 183 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 94 | {covid-19,practice,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 54 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {imaging,covid-19,practice,laboratory,oncology,his} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicomscope | 33 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> <span class="idiff left right">htsjdk | 32 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dcm2niix | 25 | {imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 25 | {covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 20 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 17</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> <span class="idiff left right">dicom3tools | 32 | {imaging</span>} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> <span class="idiff left right">htsjdk | 31 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dcm2niix | 23 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 23 | {covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 18</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> minc-tools | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right">openslide | 17</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">plastimatch | 16 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 15 | {covid-19,practice} </span> | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">king | 15 | {typesetting,imaging}</span> | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 14 | {bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 16</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 15 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">king | 15 | {imaging,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">openslide | 15 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right">plastimatch | 15 | {imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> biosig4c++ | 13 | {imaging,physics} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> insighttoolkit4 | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> adun.app | 12 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> biosig4c++ | 12 | {imaging,physics} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> biojava-live | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> obitools | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> librg-utils-perl | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> orthanc-webviewer | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> orthanc-dicomweb | 8 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> tree-puzzle | 8 | {cloud,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> orthanc-dicomweb | 8 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> stacks | 8 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> tree-puzzle | 8 | {bio-phylogeny,cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> cgview | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> gasic | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> melting | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> fastlink | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> gasic | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> melting | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> orthanc-mysql | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> alter-sequence-alignment | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> arden | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> indelible | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> libsbml | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> maqview | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> mipe | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> ncbi-seg | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> norsp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> nutsqlite | 6 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> orthanc-postgresql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> piler | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> salmon | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> salmon | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> ampliconnoise | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> ampliconnoise | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> beast-mcmc | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> biomaj3-cli | 5 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> bio-rainbow | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> bio-tradis | 5 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> bio-tradis | 5 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> bppsuite | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> dazzdb | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> edtsurf | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> embassy-domainatrix | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> embassy-domalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> fitgcp | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> embassy-domainatrix | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> freecontact | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> jaligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> libgff | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> ncbi-seg | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> norsp | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> seer | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> sibsim4 | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> sigma-align | 5 | {bio<span class="idiff left right">-phylogeny,cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> sigma-align | 5 | {bio<span class="idiff left right">,bio-phylogeny,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> transrate-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> transtermhp | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> abacas | 4 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> abacas | 4 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> biomaj3-daemon | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> bitseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,23 +89,24 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> harvest-tools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> jellyfish1 | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> jmodeltest | 4 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> king-probe | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> libpal-java | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> mapsembler2 | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> mhap | 4 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> mapsembler2 | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> mhap | 4 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> mrs | 4 | {bio} | </span>
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> neobio | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> paml | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> paraclu | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> paraclu | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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108
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> pr<span class="idiff left right">edictprotein | 4 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> pr<span class="idiff left right">oalign | 4 | {bio-phylogeny,bio}</span> | </span>
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110
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> probabel | 4 | {bio,cloud} | </span>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> pscan-tfbs | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> psychopy | 4 | {psychology} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,14 +129,14 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> beads | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> clonalframeml | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> cufflinks | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> clonalframeml | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> cufflinks | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> dascrubber | 3 | {bio} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> dicompyler | 3 | {oncology} | </span>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> dindel | 3 | {bio} | </span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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138
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> freebayes | 3 | {<span class="idiff left right">bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> freebayes | 3 | {<span class="idiff left right">covid-19,bio}</span> | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> kma | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> lagan | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,10 +162,9 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> bandage | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> biosig4c++ | 2 | {imaging-dev,physics} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> centrifuge | 2 | {<span class="idiff left right">bio} </span> | </span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> delly | 2 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> centrifuge | 2 | {<span class="idiff left right">covid-19,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> delly | 2 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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169
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> dwgsim | 2 | {bio} | </span>
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170
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> elph | 2 | {bio} | </span>
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171
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -180,15 +179,13 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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180
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> maffilter | 2 | {bio} | </span>
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181
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> mencal | 2 | {tools} | </span>
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182
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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183
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> mlv-smile | 2 | {<span class="idiff left right">bio,cloud</span>} | </span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> mlv-smile | 2 | {<span class="idiff left right">cloud,bio</span>} | </span>
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184
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> mptp | 2 | {bio} | </span>
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185
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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186
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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187
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> patman | 2 | {bio} | </span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> phipack | 2 | {bio} | </span>
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189
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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190
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> proalign | 2 | {bio,bio-phylogeny} | </span>
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191
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> python-scitrack | 2 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> qcumber | 2 | {bio} | </span>
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193
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> quorum | 2 | {bio} | </span>
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194
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> relion | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -199,17 +196,17 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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199
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="plaintext"> seqsero | 2 | {bio} | </span>
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200
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="plaintext"> snap-aligner | 2 | {bio} | </span>
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201
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> spaced | 2 | {bio} | </span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> stringtie | 2 | {bio,covid-19} | </span>
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202
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> suitename | 2 | {bio} | </span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="plaintext"> surankco | 2 | {bio} | </span>
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204
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> tnseq-transit | 2 | {covid-19,bio} | </span>
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205
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> tracetuner | 2 | {bio} | </span>
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206
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> velvetoptimiser | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> vsearch | 2 | {<span class="idiff left right">bio} </span> | </span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> vsearch | 2 | {<span class="idiff left right">covid-19,bio}</span> | </span>
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208
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> yaha | 2 | {bio} | </span>
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209
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> biobambam2 | 1 | {bio<span class="idiff left right">,covid-19,bio-dev</span>} | </span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> biobambam2 | 1 | {bio<span class="idiff left right">-dev,covid-19,bio</span>} | </span>
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210
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> ctn | 1 | {imaging-dev} | </span>
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212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> embassy-phylip | 1 | {cloud,bio} | </span>
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213
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,37 +219,38 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> multiqc | 1 | {covid-19,bio} | </span>
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223
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">practice,tools,data</span>} | </span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> oscar | 1 | {<span class="idiff left right">data,practice,tools</span>} | </span>
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226
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> pal2nal | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbdagcon | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> plasmidseeker | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> rampler | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> samblaster | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> samblaster | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> spaln | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="plaintext"> stringtie | 1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> sweed | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> trace2dbest | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> tree-puzzle | 1 | {bio,bio-phylogeny,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> tvc | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext"> varscan | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> varscan | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> acedb | 0 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> acedb | 0 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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246
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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250
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> biosig4c++ | 0 | {physics} | </span>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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249
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> ctn | 0 | {imaging-dev} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> freecontact | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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257
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="plaintext"> libbioparser-dev | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -267,7 +265,7 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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268
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">covid-19,imaging-dev</span>} | </span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">imaging-dev,covid-19</span>} | </span>
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271
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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273
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -288,20 +286,20 @@ Last-Update: Wed, 13 May 2020 01:42:03 +0000</td>
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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289
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC288" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"> pycoqc | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> python-py2bit | 0 | {bio-dev,bio} | </span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> pycoqc | 0 | {bio,covid-19} | </span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> python-py2bit | 0 | {bio,bio-dev} | </span>
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="plaintext"> relion | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> relion | 0 | {bio} | </span>
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293
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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297
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> seq-gen | 0 | {bio} | </span>
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298
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296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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299
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297
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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298
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> solvate | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext"> bustools | -1 | {<span class="idiff left right">bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="plaintext">(3<span class="idiff left right">30</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext"> bustools | -1 | {<span class="idiff left right">covid-19,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext">(3<span class="idiff left right">28</span> rows)</span>
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