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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pybedtools">Debian Med / python-pybedtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/bcecf9a3828effce5ee77fc1b7e68edeecb86b2e">bcecf9a3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:55:50+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Rebuild against available architectures
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/18297b49eb761f72ab4b9ab67b0ff40e27ec9edb">18297b49</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:56:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/c233707f69fba2d2e0f6130161060dfa3ea4e6f7">c233707f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:56:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">R-U: Trailing whitespace in debian/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/b1f37009c09b1a4d70b78accb8807737be5d1213">b1f37009</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:56:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/93d78f9a49061905ea5181c98efc46a193ed96b9">93d78f9a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:56:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/8084054ae2defd8b43e64d0a32cd821db3a20c49">8084054a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T08:56:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/e85142bc04ee002bb673b1a5075646ec43540e29">e85142bc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T09:08:07+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing shebang lines
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/d860ae7909e11bb2ba14321d03c28e026c3969b0">d860ae79</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T09:12:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move example script to examples
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/ebc34a08afc165a0a0dd035f000552edc7508010">ebc34a08</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T09:13:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix permission of script
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/9c707c144da04ad6fb9ae7fe852b006e558d39b3">9c707c14</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T09:14:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">There is obviously some reason to do manual cleaning
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pybedtools/-/commit/6e694bb007d6d21b38865304d638c49a12bf324f">6e694bb0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-13T09:18:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#9f87470105129cfbe0ceb2c3ff75fc064d086a4d">
<span class="new-file">
+
debian/patches/add_missing_shebang.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#829ec5389699b58decf56f486c120047b297cd48">
debian/pybedtools-bin.lintian-overrides
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-pybedtools (0.8.0-4) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Rebuild against available architectures</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #960411</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.0 (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/rules (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> Repository-Browse.</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Add missing shebang lines in scripts</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Move example script to examples</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> * Fix permission of script</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 13 May 2020 09:14:53 +0200</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">python-pybedtools (0.8.0-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> * Mark the -doc package Multi-Arch: foreign</span>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,10 +24,11 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> python3-sphinx,</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> r-base-core,</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.0</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">5</span>.0</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-pybedtools</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/python-pybedtools.git</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Homepage: https://daler.github.io/pybedtools/</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Package: pybedtools-bin</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Architecture: all</span>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#9f87470105129cfbe0ceb2c3ff75fc064d086a4d"><strong>debian/patches/add_missing_shebang.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Wed, 13 May 2020 08:56:48 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Add missing shebang lines</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/pybedtools/scripts/annotate.py</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pybedtools/scripts/annotate.py</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -1,3 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> annotate a file with the neearest features in another.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/pybedtools/scripts/examples/pbt_plotting_example.py</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/pybedtools/scripts/examples/pbt_plotting_example.py</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="p">@@ -1,4 +1,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-from __future__ import print_function</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# from __future__ import print_function</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> import time</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> import os</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> import pybedtools</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,3 +7,4 @@ spelling</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">define_filenotfounderror_python2.patch</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">remove_badges_from_documentation.patch</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">parseDebianVersions.patch</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">add_missing_shebang.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#829ec5389699b58decf56f486c120047b297cd48"><strong>debian/pybedtools-bin.lintian-overrides</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"># Better not messing with the community which expects these executables</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># just the ways these are.</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># see https://lists.debian.org/debian-med/2018/06/msg00043.html</span>
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3
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/annotate.py</span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/intersection_matrix.py</span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/intron_exon_reads.py</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/pbt_plotting_example.py</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/peak_pie.py</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/venn_gchart.py</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">pybedtools-bin: script-with-language-extension usr/bin/venn_mpl.py</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ DH_VERBOSE := 1</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">export PYBUILD_NAME=pybedtools</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">export MATPLOTLIBRC=$(CURDIR)/debian/</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">#export PYBUILD_TEST_ARGS=--attr '!url'<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">#export PYBUILD_TEST_ARGS=--attr '!url'</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">export PYBUILD_BEFORE_TEST=cp {dir}/debian/mpl-expected.png {build_dir}/pybedtools/test/ ; python3 {dir}/setup.py install --user ; export HOME=$(CURDIR)/fakehome</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">export PYBUILD_TEST_ARGS=-v --doctest-modules</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">export PYBUILD_AFTER_TEST=cd {dir}/docs ; make clean doctest</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,12 +22,13 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3 setup.py develop --user</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3 setup.py build_sphinx</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">override_dh_<span class="idiff left right">auto_</span>install:</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> dh_<span class="idiff left right">auto_</span>install</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> mkdir -p debian/pybedtools-bin/usr/bin</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> mkdir -p debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> mv debian/python3-pybedtools/usr/bin/*example* debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> rm -fr debian/python-pybedtools/usr/bin</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> rm -fr debian/python3-pybedtools/usr/bin</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,4 +42,8 @@ override_dh_auto_clean:</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> rm -rf build</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> #dh_auto_clean</span></pre>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> # dh_auto_clean</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">override_dh_fixperms:</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> dh_fixperms</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> chmod -x debian/*/usr/lib/python3/dist-packages/pybedtools/scripts/pybedtools</span></pre>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-pybedtools/-/compare/b920999b74040b9c96af14770b42e23a6a2e8b98...6e694bb007d6d21b38865304d638c49a12bf324f#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/daler/pybedtools/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/daler/pybedtools/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">- Author: R. K. Dale and B. S. Pedersen and A. R. Quinlan</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Title: "Pybedtools: a flexible Python library for manipulating genomic datasets\</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,4 +23,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> Entry: OMICS_09508</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">- Name: conda:bioconda</span>
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23
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Entry: pybedtools</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">Repository: https://github.com/daler/pybedtools</span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Repository: https://github.com/daler/pybedtools.git</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Repository-Browse: https://github.com/daler/pybedtools</span></pre>
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