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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/minimap2">Debian Med / minimap2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/minimap2/-/commit/7dd67066521214fbe8959a08804d469630209337">7dd67066</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-05-15T14:01:50+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add libminimap to Python library
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#d4657693b4cbba1934a7abddc0a140b4505aebf7">
debian/patches/ar.patch
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<li class="file-stats">
<a href="#0152a445c5ca093e900d11b69b1be23f80f9d7db">
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+
debian/patches/link_mappy_to_libminimap.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="d4657693b4cbba1934a7abddc0a140b4505aebf7">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/7dd67066521214fbe8959a08804d469630209337#d4657693b4cbba1934a7abddc0a140b4505aebf7"><strong>debian/patches/ar.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,11 +2,9 @@ Author: Steffen Moeller</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: 2020-03-15 04:06:20 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Descriptio: Fix ar call to support debugging symbols properly</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">Index: minimap2/Makefile</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- minimap2.orig/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ minimap2/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="p">@@ -36,7 +36,8 @@</span> minimap2-lite:example.o libminimap2.a</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">--- a/Makefile</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -35,7 +35,8 @@</span> minimap2-lite:example.o libminimap2.a</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> $(CC) $(CFLAGS) $< -o $@ -L. -lminimap2 $(LIBS) $(LDFLAGS)</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> libminimap2.a:$(OBJS)</span>
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<li id="0152a445c5ca093e900d11b69b1be23f80f9d7db">
<a href="https://salsa.debian.org/med-team/minimap2/-/commit/7dd67066521214fbe8959a08804d469630209337#0152a445c5ca093e900d11b69b1be23f80f9d7db"><strong>debian/patches/link_mappy_to_libminimap.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 15 May 2020 14:00:54 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Description: Add libminimap to Python library</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> FIXME: seems extra_link_args and extra_objects are ignored both</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- a/setup.py</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -19,6 +19,8 @@</span> import sys, platform</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> sys.path.append('python')</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> extra_compile_args = ['-DHAVE_KALLOC']</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# extra_link_args= ['-lminimap2'] # FIXME: this is ignored :-(</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+extra_objects = ['libminimap2.a']</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> include_dirs = ["."]</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> if platform.machine() in ["aarch64", "arm64"]:</span></pre>
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<a href="https://salsa.debian.org/med-team/minimap2/-/commit/7dd67066521214fbe8959a08804d469630209337#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ hardening.patch</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">do_not_use_natbib.bst.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">simde</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">ar.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">link_mappy_to_libminimap.patch</span></pre>
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