<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/40344e2bc448bdea32d5b4c15b5fc6c2c60ba4a0">40344e2b</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-04-30T23:00:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.3</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a03585ab89eed5e0782a1875b2d8153b97865d30">
<span class="new-file">
+
.github/ISSUE_TEMPLATE/bug_report.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#81ccd5c4e1f93eb3ab80c73b5532455bf4f82fe9">
<span class="new-file">
+
.readthedocs.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
<span class="deleted-file">
−
Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
<span class="deleted-file">
−
README.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#b5b096f958319b1c7782c800c78c4c358a58d709">
<span class="deleted-file">
−
TODO.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#ffb2e540c7c7301c64659d69a0b5cbc3e9da66b1">
bcbio/bam/cram.py
</a>
</li>
<li class="file-stats">
<a href="#e518229f249f53b16d0dd891314f18afa565e3cb">
bcbio/broad/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e058999dc6b36492007fce47afb7a70ca8b25e3d">
bcbio/chipseq/atac.py
</a>
</li>
<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
</a>
</li>
<li class="file-stats">
<a href="#399d062423d7dfda6c87b58e34ead968ccd6189c">
bcbio/heterogeneity/loh.py
</a>
</li>
<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
</a>
</li>
<li class="file-stats">
<a href="#f5ccb8a739885f7f0b20c8075bf02a335bbb6d30">
bcbio/ngsalign/alignprep.py
</a>
</li>
<li class="file-stats">
<a href="#a1a1b6c48a9d8310804e0e666a6af78553f682f8">
bcbio/ngsalign/bowtie2.py
</a>
</li>
<li class="file-stats">
<a href="#0340a7d1b2af127a4269cc7ede63fbaa798317be">
bcbio/ngsalign/mosaik.py
</a>
</li>
<li class="file-stats">
<a href="#5eae78d8d65ceec04aed346c7bfecf92d6f8df0c">
bcbio/ngsalign/postalign.py
</a>
</li>
<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
</a>
</li>
<li class="file-stats">
<a href="#28669a7ddccdf8ac47c577727840379bba16c871">
bcbio/pipeline/rnaseq.py
</a>
</li>
<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
</a>
</li>
<li class="file-stats">
<a href="#0b928052acb70b506a8457627983f038aaf8fd4d">
bcbio/qc/multiqc.py
</a>
</li>
<li class="file-stats">
<a href="#60c9503c16c39a2c9a9b5d0272611f52d6fea731">
bcbio/qc/qualimap.py
</a>
</li>
<li class="file-stats">
<a href="#0b04a493aeabb3c1426c1d5a2851345e54d5b98f">
bcbio/rnaseq/umi.py
</a>
</li>
<li class="file-stats">
<a href="#2cdd8023262242abfabb1ee24e7fd1e1cbb2562a">
bcbio/structural/purecn.py
</a>
</li>
<li class="file-stats">
<a href="#953a5484c194dec73486a5e85ad272cd898cbf31">
bcbio/upload/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#ef9e027c453496e438d979be5491259d5e843de0">
bcbio/utils.py
</a>
</li>
<li class="file-stats">
<a href="#4d8eb696f9cb2d722697111ebcb7af7007cdea24">
bcbio/variation/gatkjoint.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/bcbio/-/commit/40344e2bc448bdea32d5b4c15b5fc6c2c60ba4a0">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/bcbio/-/commit/40344e2bc448bdea32d5b4c15b5fc6c2c60ba4a0"}}</script>
</p>
</div>
</body>
</html>