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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f7d3b8cbf64e837b0310dcba8df57e379fe5d95">8f7d3b8c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-20T13:45:36+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8f7d3b8cbf64e837b0310dcba8df57e379fe5d95#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 20 May 2020 <span class="idiff left right">01:42:03</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 20 May 2020 <span class="idiff left right">13:42:04</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 190 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 99 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 54 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {oncology,practice,laboratory,his,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 191 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 100 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 52 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {imaging,oncology,his,practice,covid-19,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 31 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 31 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 30 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> d<span class="idiff left right">icom3tools | 29</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">dcm2niix | 22 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 18 | {covid-19,imaging}</span> | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 17 | {practice,covid-19}</span> | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 17 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> d<span class="idiff left right">cm2niix | 23</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 19 | {imaging,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">minc-tools | 19 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">pixelmed | 18 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 17 | {covid-19,practice}</span> | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> insighttoolkit4 | 16 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> pixelmed | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> adun.app | 13 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> plastimatch | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> adun.app | 14 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> openslide | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> vtk-dicom | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> king | 13 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> stacks | 13 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> vtk-dicom | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> king | 12 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> biosig4c++ | 10 | {imaging,physics} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> biosig4c++ | 11 | {physics,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> fastlink | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> paml | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> alter-sequence-alignment | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> ampliconnoise | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> ampliconnoise | 7 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> arden | 7 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> indelible | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> maqview | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,51 +45,51 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> orthanc-webviewer | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> piler | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> abacas | 6 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> abacas | 6 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> anfo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> bio-rainbow | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> bio-tradis | 6 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> bio-tradis | 6 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> bppsuite | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> cgview | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> dazzdb | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> embassy-domainatrix | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> embassy-domalign | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> nutsqlite | 6 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> orthanc-mysql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> psychopy | 6 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> radiant | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> salmon | 6 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> salmon | 6 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> seer | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> sibsim4 | 6 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">cloud,bio,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> sibsim4 | 6 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> sigma-align | 6 | {<span class="idiff left right">bio-phylogeny,bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> transrate-tools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> transtermhp | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> beast-mcmc | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> daligner | 5 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> daligner | 5 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> embassy-domsearch | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> gasic | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> embassy-domsearch | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> gasic | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> gatb-core | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> king-probe | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> mapsembler2 | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> mapsembler2 | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> mrs | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> neobio | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> nutsqlite | 5 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> orthanc-postgresql | 5 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> paraclu | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> paraclu | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> phyutility | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> predictprotein | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> probabel | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> pscan-tfbs | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -97,8 +97,8 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> seqtools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> sickle | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> squizz | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> treeview | 5 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> treeview | 5 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> zalign | 5 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> baitfisher | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> bandage | 4 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -117,7 +117,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> harvest-tools | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> jaligner | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> jmodeltest | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> jmodeltest | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> libgff | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> libncl | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,7 +129,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> phybin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> placnet | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> poretools | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> prime-phylo | 4 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> prime-phylo | 4 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -144,12 +144,12 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> soapaligner | 4 | {bio} | </span>
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> spread-phy | 4 | {bio<span class="idiff left right">-phylogeny,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> spread-phy | 4 | {bio<span class="idiff left right">,bio-phylogeny</span>} | </span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> beast2-mcmc | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> blasr | 3 | {bio<span class="idiff left right">,bio-ngs</span>} | </span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> blasr | 3 | {bio<span class="idiff left right">-ngs,bio</span>} | </span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> centrifuge | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> cufflinks | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> centrifuge | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> cufflinks | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,7 +162,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> mhap | 3 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> mlv-smile | 3 | {<span class="idiff left right">bio,cloud</span>} | </span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> mlv-smile | 3 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> mptp | 3 | {bio} | </span>
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> patman | 3 | {bio} | </span>
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> phipack | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,7 +174,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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175
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> scrm | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> seqmagick | 3 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> seqsero | 3 | {bio} | </span>
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> srf | 3 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -198,7 +198,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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198
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="plaintext"> nanook | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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201
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">practice,tools,data</span>} | </span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> oscar | 2 | {<span class="idiff left right">tools,data,practice</span>} | </span>
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="plaintext"> pal2nal | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> pilon | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -211,42 +211,42 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> sweed | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> tvc | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> acedb | 1 | {<span class="idiff left right">cloud,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> acedb | 1 | {<span class="idiff left right">bio,cloud</span>} | </span>
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> biobambam2 | 1 | {bio,covid-19,bio-dev} | </span>
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> busco | 1 | {bio,covid-19} | </span>
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217
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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218
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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219
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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221
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222
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> libmaus2 | 1 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> libmaus2 | 1 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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223
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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225
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226
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> python-py2bit | 1 | {bio<span class="idiff left right">,bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> python-py2bit | 1 | {bio<span class="idiff left right">-dev,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> python-scitrack | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> relion | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> seqan | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> sift | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> simpleitk | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> spaln | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext"> varscan | 1 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> spaln | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> varscan | 1 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> volpack | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> augur | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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240
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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241
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242
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> bbmap | 0 | {covid-19} | </span>
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243
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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244
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> biosig4c++ | 0 | {physics} | </span>
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245
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> busco | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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247
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> ctn | 0 | {imaging-dev} | </span>
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248
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">bio-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"> htscodecs | 0 | {<span class="idiff left right">covid-19,bio-dev</span>} | </span>
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> libbioparser-dev | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,7 +261,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">imaging-dev,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> libics | 0 | {<span class="idiff left right">covid-19,imaging-dev</span>} | </span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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267
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"> libmuscle | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -281,6 +281,7 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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281
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281
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="plaintext"> ngs-sdk | 0 | {bio-dev} | </span>
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282
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282
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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283
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283
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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284
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285
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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285
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286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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286
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287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> pilercr | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -293,11 +294,10 @@ Last-Update: Wed, 20 May 2020 01:42:03 +0000</td>
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293
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294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="plaintext"> skewer | 0 | {bio} | </span>
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294
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="plaintext"> smrtanalysis | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> solvate | 0 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">bio,covid-19</span>} | </span>
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> thesias | 0 | {<span class="idiff left right">covid-19,bio</span>} | </span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext"> bustools | -1 | {bio,covid-19} | </span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext"> parallel-fastq-dump | -1 | {covid-19} | </span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> bustools | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext">(326 rows)</span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"></span></pre>
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