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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/a78c5ffa190baf60319efee1e93899657084ac2c">a78c5ffa</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2020-05-21T10:17:05-04:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">sra-sdk 2.10.6+dfsg-3: Exclude sra-pileup check_skiplist (network).
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<h4>2 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37">
debian/patches/drop_tests.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/a78c5ffa190baf60319efee1e93899657084ac2c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">sra-sdk (2.10.6+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Also exclude sra-pileup check_skiplist test per network access.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Thu, 21 May 2020 10:17:04 -0400</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">sra-sdk (2.10.6+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * drop_tests.patch: Exclude kar (needs network access); retire</span>
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<li id="ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/a78c5ffa190baf60319efee1e93899657084ac2c#ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37"><strong>debian/patches/drop_tests.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Description: Drop tests that require network access</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Author: Aaron M. Ucko <ucko@debian.org></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Thu, 21 May 2020 <span class="idiff left right">08:37:49</span> -0400</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Thu, 21 May 2020 <span class="idiff left right">10:14:56</span> -0400</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">--- a/test/Makefile</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/Makefile</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,3 +16,14 @@ Last-Update: Thu, 21 May 2020 08:37:49 -0400</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"> copycat \</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> sra-stat \</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> srapath \</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/test/sra-pileup/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/sra-pileup/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="p">@@ -36,7 +36,7 @@</span> $(TEST_TOOLS): makedirs</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> @ $(MAKE_CMD) $(TEST_BINDIR)/$@</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> ifdef PYTHON</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-runtests: check_exit_code check_skiplist</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+runtests: check_exit_code # check_skiplist</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> slowtests: fastq_dump_vs_sam_dump sam_dump_spotgroup_for_all</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span></pre>
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