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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/785951bc351ba5ca927dca88f15a60a7202b1556">785951bc</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2020-05-21T09:03:43-04:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">sra-sdk 2.10.6+dfsg-2: Exclude kar test; reenable test-vdb-config.
* drop_tests.patch: Exclude kar (needs network access); retire
test-vdb-config exclusion with (fake)root out of the picture.
Update description accordingly.
* ignore_failing_test_for_the_moment_FIXME.patch: Resync.
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37">
debian/patches/drop_tests.patch
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<li class="file-stats">
<a href="#339a12787b2791248812cd73ee5dd5ea5235b868">
debian/patches/ignore_failing_test_for_the_moment_FIXME.patch
</a>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/785951bc351ba5ca927dca88f15a60a7202b1556#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">sra-sdk (2.10.6+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * drop_tests.patch: Exclude kar (needs network access); retire</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> test-vdb-config exclusion with (fake)root out of the picture.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Update description accordingly.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * ignore_failing_test_for_the_moment_FIXME.patch: Resync.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Thu, 21 May 2020 09:03:42 -0400</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">sra-sdk (2.10.6+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<li id="ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/785951bc351ba5ca927dca88f15a60a7202b1556#ffa8dce2c1d0809c7fb4e14662ea71169c5d1f37"><strong>debian/patches/drop_tests.patch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: Drop test<span class="idiff left right"> that should not run as root</span></span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Author: A<span class="idiff left right">ndreas Tille <tille</span>@debian.org></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Thu, <span class="idiff left right">19 Oct 2017 23:58:30 +02</span>00</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Drop test<span class="idiff left right">s that require network access</span></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: A<span class="idiff left right">aron M. Ucko <ucko</span>@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: Thu, <span class="idiff left right">21 May 2020 08:37:49 -04</span>00</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">--- a/test/vdb-config/Makefile</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/vdb-config/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="p">@@ -88,8 +88,9 @@</span> runtests: test-vdb-config model</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> test-vdb-config:</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> @ printf "Testing exit code vdb-config of vdb-config... "</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @ PATH=$(BINDIR):"$(PATH)" ; ./test-vdb-config.pl</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- @ echo OK</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #@ PATH=$(BINDIR):"$(PATH)" ; ./test-vdb-config.pl</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #@ echo OK</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ @ echo Test dropped since executable should not run as root</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> #-------------------------------------------------------------------------------</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> # test-vdb-config-model</span>
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19
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">--- a/test/Makefile</span>
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20
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/Makefile</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="p">@@ -37,<span class="idiff left right">7 +37,6</span> @@</span> include $(TOP)/build/Makefile.config</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">@@ -37,<span class="idiff left right">11 +37,9</span> @@</span> include $(TOP)/build/Makefile.config</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> SUBDIRS = \</span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> read-filter-redact \</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> prefetch \</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,3 +12,7 @@ Last-Update: Thu, 19 Oct 2017 23:58:30 +0200</td>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> vdb-config \</span>
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27
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> align-info \</span>
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28
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> align-cache \</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- kar \</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> copycat \</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> sra-stat \</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> srapath \</span></pre>
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<li id="339a12787b2791248812cd73ee5dd5ea5235b868">
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/785951bc351ba5ca927dca88f15a60a7202b1556#339a12787b2791248812cd73ee5dd5ea5235b868"><strong>debian/patches/ignore_failing_test_for_the_moment_FIXME.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +15,7 @@ Last-Update: Sat, 24 Mar 2018 07:41:44 +0100</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff">--- a/test/Makefile</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/test/Makefile</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="p">@@ -36,<span class="idiff left right">20 +36,13</span> @@</span> include $(TOP)/build/Makefile.config</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="p">@@ -36,<span class="idiff left right">19 +36,12</span> @@</span> include $(TOP)/build/Makefile.config</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> #</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> SUBDIRS = \</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> read-filter-redact \</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,6 @@ Last-Update: Sat, 24 Mar 2018 07:41:44 +0100</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> vdb-config \</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"> align-info \</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- align-cache \</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"> kar \</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- copycat \</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- sra-stat \</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- srapath \</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +35,7 @@ Last-Update: Sat, 24 Mar 2018 07:41:44 +0100</td>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"> vdb-copy \</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> qual-recalib-stat \</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> vdb-validate \</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="p">@@ -6<span class="idiff left right">3,6 +56</span>,8 @@</span> include $(TOP)/build/Makefile.targets</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="p">@@ -6<span class="idiff left right">2,6 +55</span>,8 @@</span> include $(TOP)/build/Makefile.targets</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff"> $(SUBDIRS):</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"> @ $(MAKE) -C $@</span>
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