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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d833da11d0d9eb3a7b2d3107be73cc5d9e0de207">d833da11</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-05-23T13:46:26+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d833da11d0d9eb3a7b2d3107be73cc5d9e0de207#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 23 May 2020 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sat, 23 May 2020 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">4</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right">101</span> | {imaging,practice,covid-19} | </span>
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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> gdcm | 5<span class="idiff left right">4</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">2</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | <span class="idiff left right"> 99</span> | {imaging,practice,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 5<span class="idiff left right">5</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 48 | {imaging,covid-19,laboratory,practice,oncology,his} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 31 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> htsjdk | 31 | {bio-dev} | </span>
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<td class="diff-line-num new_line old" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 30 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">2</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dcm2niix | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gdcm | 19 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> minc-tools | 19 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> gnumed-server | 17 | {practice,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,11 +24,11 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> stacks | 13 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> king | 12 | {typesetting,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> obitools | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> biojava-live | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biosig4c++ | 10 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> obitools | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ea-utils | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> paml | 9 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,7 +66,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> edtsurf | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> gasic | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> gatb-core | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -87,9 +86,11 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> clonalframeml | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> cluster3 | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> dascrubber | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> dicompyler | 5 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> dindel | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> freebayes | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> gasic | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> harvest-tools | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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96
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> jellyfish1 | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,7 +123,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> centrifuge | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> delly | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -139,7 +139,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> quorum | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> rambo-k | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> rdp-readseq | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> roguenarok | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -153,7 +152,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> yaha | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> blasr | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> cufflinks | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> dwgsim | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> elph | 3 | {bio} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> ghmm | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,7 +159,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> jaligner | 3 | {bio} | </span>
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> lamarc | 3 | {bio} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> libsmithwaterman | 3 | {bio} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> maffilter | 3 | {bio} | </span>
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> mauve-aligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> mlv-smile | 3 | {cloud,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -172,6 +169,7 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> prottest | 3 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> qcumber | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> qrisk2 | 3 | {practice} | </span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> relion | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -187,6 +185,8 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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187
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> vsearch | 3 | {bio,covid-19} | </span>
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188
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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189
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> biosig4c++ | 2 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> busco | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> cufflinks | 2 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> getdata | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"> kma | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> libbio-mage-utils-perl | 2 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -213,7 +213,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> acedb | 1 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> biobambam2 | 1 | {bio-dev,covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> blimps | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> busco | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="plaintext"> embassy-phylip | 1 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="plaintext"> emboss-explorer | 1 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> emmax | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,7 +221,6 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> libmaus2 | 1 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> libmialm | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> libsmithwaterman | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> libxdf | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -298,5 +296,5 @@ Last-Update: Sat, 23 May 2020 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="plaintext"> wtdbg2 | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="plaintext"> bustools | -1 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext">(32<span class="idiff left right">5</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext">(32<span class="idiff left right">3</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"></span></pre>
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